Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq48 136 3e-27 seq101 120 2e-22 seq662 116 3e-21 >seq48 Length=15315231 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || ||||| ||||| || ||||| || || | Sbjct 867012 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 866953 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || ||||| |||||| | ||||| || ||||| || || || Sbjct 866952 AGGGTACGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 866893 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || ||||| | ||| |||||| | || | |||||| | | |||||| Sbjct 866892 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACT 866833 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || || || || | ||| || || || ||||||||| Sbjct 866832 TCAAGGGTGATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 866785 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || |||| || || ||||| ||||| || ||||| || || | Sbjct 866224 TCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 866165 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 866164 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 866105 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| | ||| |||||| | || | |||||| | ||||| Sbjct 866104 GATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 866045 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || || || || ||||| | ||| || || || ||||||||| Sbjct 866044 TTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACGAAAATCTGCATT 865996 Score = 122 bits (134), Expect = 7e-23 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| || || |||| || || ||||| ||||| || ||||| || |||| Sbjct 865996 TCCCCCTCTCAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 865937 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 865936 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAGG 865877 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| | ||| |||||| | || | |||||| | ||||| Sbjct 865876 GATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 865817 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || || || || || || ||||| || || || ||||| Sbjct 865816 TTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 >seq101 Length=10068975 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 || ||| ||| |||| ||||||||||| || || | | ||| || ||| || ||||| Sbjct 9126740 ATAAAGAGTGTATTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTG 9126681 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| ||| |||||||| || ||||| || || || || || | || Sbjct 9126680 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 9126621 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| |||||| || || || |||| || || |||||||| || || || | Sbjct 9126620 GGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGTCTTTCCCAT 9126561 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 || |||||| ||||| ||||| || Sbjct 9126560 TAGGGTTTTTACAAAAATCTGTAT 9126537 >seq662 Length=1284721 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29561 CTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAA 29620 |||||||||| | ||| ||||| || |||||||| ||||| || |||| || || | | Sbjct 539878 CTCCCCTCAAGCTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACA 539937 Query 29621 TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAA 29680 ||| | ||| || || ||||| |||||| | ||||| || ||||| || || || | Sbjct 539938 GGGTACATCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGA 539997 Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 | || || || ||||| | ||| |||||| | || | |||||| | ||||||| Sbjct 539998 TGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTT 540057 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | || || || | || | ||| || ||||| ||||||||| Sbjct 540058 CAAGGTTAATGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCATT 540104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385113523418769