Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq60 187 2e-42 seq25 96.9 3e-15 >seq60 Length=13592559 Score = 187 bits (206), Expect = 2e-42 Identities = 711/1107 (64%), Gaps = 43/1107 (4%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| | || |||||||| || | ||| |||| | |||||| | || | Sbjct 9177756 ATGCCTTCTATGTTGTGGACCTTGGAGACATCCTAAAGAAACATCTGAGATGGTTAAAAG 9177815 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | ||| | ||| | | | Sbjct 9177816 CTCTTCCTCGTGTCACACCCTTTTATGCAGTCAAATGTAATGAAAGCAGAGCTA-TAGTG 9177874 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||||||||||||| | || || ||||||||||| || ||| || || || || Sbjct 9177875 AAGACCCTAGCTGCCATAGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAATTG 9177934 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| || || | |||| |||||| | | || ||| ||||||| || Sbjct 9177935 GTGCAGAGTCTTGGTGTGCCTCCAGAGAGGATAATCTATGTAAATTCTTGTAAACAAGTA 9177994 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | |||||| | ||||||||||||||||||||| Sbjct 9177995 TCTCAAATTAAGTATGCTGCCAATAATGGAGTTCAGATGATGACTTTTGATAGTGAAGTC 9178054 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || || |||| || ||||| Sbjct 9178055 GAGTTGATGAAAGTTGCCAGGGCACATCCAAAGGCAAAATTGGTTTTGCGGATTGCCACT 9178114 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || ||||| || ||| | || | || |||| Sbjct 9178115 GATGATTCCAAAGCAGTCTGTCACCTTAGTGTTAAATTTTGTGCCATGCTCAAAACCAGT 9178174 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || | ||| || ||| | || | || || || || ||||| ||||| Sbjct 9178175 AGGCTTCTTTTGGAACGTGCTAAAGAGCTAAATATTGATGTCATTGGTGTCAGTTTCCAT 9178234 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 ||||| |||||||| | || | || | | |||| || |||| ||| | | Sbjct 9178235 GTGGGAAGTGGCTGTACTGACCCCGAGACCTTTGTGCAAGCAATCTCTGATGCCCGCTGT 9178294 Query 20744 GCTTTTGACTTTGGCACGCTGATGGGCTTTGACATGTACCTCTTGGATATTGGTGGCGGC 20803 | |||||| | || || | | || || |||||| || | ||||||||||| ||| Sbjct 9178295 GTCTTTGACATGGGAACTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGTGGTGGC 9178354 Query 20804 TTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTAAC 20860 ||| || ||||| |||| || ||| || ||||| || || | | ||||| || Sbjct 9178355 TTT-CCTGGATC--TGAGGATGTGAAGCTAAAATTTGAAGAGATCACGAATGTCATCAAT 9178411 Query 20861 GCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTGGC 20920 | || ||||| | | ||||||| || | ||| ||| || | ||| || ||| Sbjct 9178412 CCAGCATTGGACAAGTATTTTCCCTCAGACTCTGGTGTGAAAATCATAGCTGAGCCAGGC 9178471 Query 20921 AGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTA--AAAAGTGTG 20978 || ||||| | | | || || | || | ||||| | | | ||||| | |||| ||| Sbjct 9178472 AGATACTATGTTGCATCAGCTTTCACCCTTGCTGTTAATATCATTGCCAAGAAAATTGTA 9178531 Query 20979 TTGAAG--ACA------CTC-----------------CTGGAGATAAAAAGTTTATGTAT 21013 || ||| ||| ||| || | || ||| ||||||||| Sbjct 9178532 TTAAAGGAACAGACAGGCTCTGATGATGAAGATGAATCTAGTGAACAAACCTTTATGTAT 9178591 Query 21014 TATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTCCT 21073 ||||| ||||||||||| || || ||||| ||||| | | | ||||||| | | Sbjct 9178592 TATGTGAATGATGGCGTATAGGGATCATTTAATTGCATCCTTTATGACCATGCACATGTA 9178651 Query 21074 ATGCCTATGCTGCTTAAAGAAAAAC-GCCTTGAAGACAAAGACTATGTTTCTAGCATTTG 21132 | |||| | |||| ||||| | | | || || ||| |||| |||||||| || Sbjct 9178652 AAGCCTCTTCTGC-AAAAGAGACCCAAACCAGATGAGAAATACTACTCATCTAGCATATG 9178710 Query 21133 GGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTTCA 21192 ||| || | || |||||| | ||| | |||||| |||| ||||| ||||||| | || Sbjct 9178711 GGGACCGACATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACTTGCCAGAAATGCA 9178770 Query 21193 ----AGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGCT-CT 21247 ||||| || ||| | | |||||||||||||| ||||||| || | ||| || Sbjct 9178771 TGTGGGTGGGTGATTGGATGCTGTTTGAAAACATGGGTGCTTACA-CTGTTGCCGCTGCT 9178829 Query 21248 TCAACCTTTAACGGCTTCCCAAAGCCA 21274 || || || || || |||| | |||| Sbjct 9178830 TCTACTTTCAATGGGTTCCAGAGGCCA 9178856 >seq25 Length=20042899 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 21104 GAAGACAAAGACTATGTTTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATT 21163 || || ||| |||| |||||||| ||||| || | || |||||| | ||| | ||| Sbjct 5565784 GATGAGAAATACTACTCATCTAGCATATGGGGACCGACATGTGATGGCCTTGATCGGATT 5565843 Query 21164 GTTAAGCGGTGTGAACTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATG 21223 ||| |||| ||||| |||||||| | || ||||| || ||| | | |||||||||||| Sbjct 5565844 GTTGAGCGCTGTGACCTGCCAGAAATGCATGTGGGTGATTGGATGCTGTTTGAAAACATG 5565903 Query 21224 GGCGCTTACAGCTTGGTCAGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCA 21274 || ||||||| || | ||| |||| || || || || |||| | |||| Sbjct 5565904 GGTGCTTACA-CTGTTGCTGCTGCTTCTACTTTCAATGGGTTCCAGAGGCCA 5565954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463415175651120