Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq48 192 1e-43 seq662 170 4e-37 seq139 161 2e-34 seq101 145 1e-29 seq666 122 2e-22 seq163 109 1e-18 seq11 98.7 2e-15 seq141 96.9 7e-15 seq107 91.5 3e-13 seq6 91.5 3e-13 seq323 84.2 4e-11 >seq48 Length=15315231 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || ||||||||||| || |||||||| || || || ||||| Sbjct 867013 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 866954 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| ||||||||||| | || || || || ||||| Sbjct 866953 CAGGGTACGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 866894 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||||||||| |||||||| || ||||| ||||| || ||| |||| ||||| Sbjct 866893 GATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTAC 866834 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| | || || ||||| || |||| ||||| || || ||||||||| Sbjct 866833 TTCAAGGGTGATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 866785 >seq662 Length=1284721 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82585 CTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATA 82644 |||| ||||| | ||| || |||||||| || || |||||||| || | || ||||| | Sbjct 539878 CTCCCCTCAAGCTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACA 539937 Query 82645 GAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTA 82704 | | | || ||||| || ||||| ||||||||||| | || || || || ||||| | Sbjct 539938 GGGTACATCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGA 539997 Query 82705 TTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTT 82764 | |||||||||||||| |||||||| || ||||| ||||| || ||| | || ||||||| Sbjct 539998 TGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTT 540057 Query 82765 CCAAAGTT-ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| ||| || ||||| | |||| ||||| ||||| ||||||||| Sbjct 540058 -CAAGGTTAATGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCATT 540104 >seq139 Length=8626845 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| || || | |||||| || || |||||||| ||||| || |||| Sbjct 1931034 TACCACCCCTCAGACGAAGGACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAG 1930975 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| | || || || |||||||| || || || || || || | Sbjct 1930974 AAAGAGTGCGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 1930915 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| ||||| || || ||||| || || |||||| | || || | Sbjct 1930914 GAATGCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCGATGGTATCACTGGGCTCCA 1930855 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||||||||| | |||||||| || |||||||| Sbjct 1930854 CCTCCAGGGTGATGGTCTTGCCTGTTAGGGTCTTTACGAAGATCTGCAT 1930806 >seq101 Length=10068975 Score = 145 bits (160), Expect = 1e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| |||| || || || || || ||||| | | | || ||||| ||||| || Sbjct 9126736 AGAGTGTATTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTG 9126677 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| ||||| || ||||| ||||| |||||||||||||| || ||||| || Sbjct 9126676 CCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 9126617 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| || ||||| ||||| || || | |||||| ||||| || | | Sbjct 9126616 TTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGTCTTTCCCATTAGG 9126557 Query 82791 GTCTTTACAAATATCTGCAT 82810 || |||||||| ||||| || Sbjct 9126556 GTTTTTACAAAAATCTGTAT 9126537 >seq666 Length=1230470 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | ||||| || | |||||||| || || || ||||| ||||| | || ||| Sbjct 1199726 AGAACAAGATGCAGGGTCCACTCTTTCTGGATGTTGTAGTCAGAAAGAATGCGGCCATCT 1199667 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 ||| | || || | |||||||| || || | || || || || || ||| | | ||| Sbjct 1199666 TCTGGCTGCTTGCTGGCAAAGATGAGCCTCTTCTGGTCAGGGGGAATGCCTCCTTCATCC 1199607 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || ||||| || || ||||| | || || | |||| || || ||| Sbjct 1199606 TGGATCTTAGCCTTCACATTCTCGATGATATCACTGGGCTCCATCTCCAGGGTGATGGTC 1199547 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| | ||||||||||| |||||||| Sbjct 1199546 TTGCCTGTTAGGGTCTTTACAAAGATCTGCAT 1199515 >seq163 Length=7758102 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 82588 CTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAA 82647 |||||| | | || || | ||||||||| || |||||||| || || || ||||| || Sbjct 3653 CTCTCAGAAGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGG 3594 Query 82648 TTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTA--- 82704 | || | ||| || ||||||||||||||||| | || || || | ||| | Sbjct 3593 TGTGCCCATTTTCCAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTGACAAGGAATGC 3534 Query 82705 -TTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||| || ||||| ||||||| || ||||| | ||| || | ||| || |||||| Sbjct 3533 CTTCCTTCTTTGTCTTGGATCTTTGACTTGACATTCTTAATGGTGTTATTGGGCTCTACT 3474 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||| | | |||| ||||| | || ||||| ||| Sbjct 3473 TCAAGGGTGATTGTCGTACTGGTCAGGGTCTTCATGAAGATCTGTATT 3426 >seq11 Length=25647438 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| | ||||| || || || || ||||| || || ||| Sbjct 21906530 TGGTGGTACTTTGTATCTAAAGGAGTGGAATATTTGGACACAGTATTTTTTATCCTAAGG 21906589 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | || ||||||||||||| ||| |||||||| || Sbjct 21906590 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 21906649 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||||||| | || || || |||| Sbjct 21906650 TGGTGGATTGGAATTAAATGGGTGGCAGGGGGACAAG 21906686 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||| ||||| ||| |||||||||| |||||||| || ||||| | || |||| Sbjct 21908361 AAGCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCATGTGATCATGTACTCATACTATG 21908420 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | | | || | ||| || | || | |||||| | ||||||||||| || || || | Sbjct 21908421 GGTTAACTGCATTTGGTCCATGGATTCAGAAGTATCTCTGGTGGAAGCGATACCTGACCA 21908480 Query 60429 T 60429 | Sbjct 21908481 T 21908481 >seq141 Length=8596878 Score = 96.9 bits (106), Expect = 7e-15 Identities = 152/214 (71%), Gaps = 13/214 (6%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || || || |||| |||||| || || ||||| || |||| | | | | Sbjct 2166084 CGCAACACAAAATGAAGAGAAGATTCCTTTTGAATATTGTAGCCAGACAAGGTACATTCA 2166143 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 |||| |||||| || ||||||||||| ||||| || ||| |||||||||| | Sbjct 2166144 TCTTGTAGTTGCTTGCCAGCAAAGAT-AGTCTCTGCTGA---------ATTCCTTCCTCA 2166193 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG-GTTCTACTTCCAAAGTTAT 82774 || |||||||| || ||||||||||| | ||| | | || ||| || || | ||| || Sbjct 2166194 TCATGAATCTTGGCCTTTACATTTTCTACTGTAGC-TCAGAATTCAACCTCAAGAGTAAT 2166252 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||||| | ||| || |||||||| |||||| Sbjct 2166253 GGTCTTCTCCATCAGGGTTTTTACAAA-ATCTGC 2166285 >seq107 Length=10112982 Score = 91.5 bits (100), Expect = 3e-13 Identities = 111/152 (73%), Gaps = 7/152 (5%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| | || || || || || || ||||| | || || ||||| ||||| || Sbjct 238124 AGAGTGCACTCCTTTTGAATGTTGTAGTCAGACAAGATATATCCATCTTCCAGTTGCTTA 238183 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| ||||| || ||||| ||||| ||||||||||||||||| || Sbjct 238184 CCAGCGAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCTTG-------GCC 238236 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| | ||||| |||||| || Sbjct 238237 TTTACATTTTCTCTTGTATCCGAAGGTTCAAC 238268 >seq6 Length=31634872 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731 |||||||||| || | | ||||| ||||| ||| ||| ||| ||||| ||||| || | Sbjct 11568303 CAGCAAAGAT--GTTTCTCCTGATCAGGAGGAATTTCTTTCTTGTCTTGGATCTTGGCCT 11568360 Query 82732 TTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACG 82791 |||||||||| | ||||| |||||| || || | ||| || ||||| ||||| | Sbjct 11568361 TTACATTTTCTTTTGTATCTGAAGGTTCAACCTCAAGAGTGATGGTCTTCCCTGTTAGGA 11568420 Query 82792 TCTTTACAAATATCTGC 82808 | ||||||| |||||| Sbjct 11568421 CCCTTACAAAAATCTGC 11568437 >seq323 Length=4086244 Score = 84.2 bits (92), Expect = 4e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 82597 GCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGT 82656 |||| || | |||||| || | |||||||| || | |||||| || || | | |||| Sbjct 3269815 GCAGCACCATGTGCAGGGTGAACTCTTTCTGGATGTCATAATCTGAGAG--TGCAGCCGT 3269872 Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTG-ATCTG-GAGGTATTCCTTCCTT 82714 | ||||| ||||| || |||| || || || || || | | || | || ||||| Sbjct 3269873 CCTCTAGCTGTTTGCCTGCAAGTATCAGATGCTGCTGGATGAGTGGGGGAAACCCTCCTT 3269932 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||| || || ||||| ||||| ||| | | ||||| || || || || | ||| || Sbjct 3269933 TCCTTGCATTTTGGCTTTGACATTCTCAGTGATGTCATTGGGCTCAACCTCAAGAGTGAT 3269992 Query 82775 CGTCTTGCCTGTCA 82788 ||||||||||||| Sbjct 3269993 GGTCTTGCCTGTCA 3270006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981544044410551