Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq330 107 3e-18 seq684 105 9e-18 seq253 105 9e-18 seq48 104 3e-17 seq44 104 3e-17 seq430 98.7 1e-15 seq127 95.1 2e-14 seq12 95.1 2e-14 seq580 91.5 2e-13 seq172 89.7 7e-13 seq107 87.8 2e-12 seq6 86.0 8e-12 seq72 84.2 3e-11 seq74 82.4 1e-10 >seq330 Length=3944073 Score = 107 bits (118), Expect = 3e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712 || ||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 2054961 CTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 2055020 Query 8713 GATTCCCCGACGAGGAG 8729 |||||||||||| |||| Sbjct 2055021 GATTCCCCGACGGGGAG 2055037 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 2054963 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 2055022 Query 11786 TTCCCCGACGAGGAG 11800 |||||||||| |||| Sbjct 2055023 TTCCCCGACGGGGAG 2055037 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2055037 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2054978 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 2054977 TACTAACGAGGA 2054966 >seq684 Length=1121939 Score = 105 bits (116), Expect = 9e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 416680 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 416739 Query 8717 CCCCGACGAGGAGCAG 8732 |||||||| |||| || Sbjct 416740 CCCCGACGGGGAGAAG 416755 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 416681 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 416740 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 416741 CCCGACGGGGAG 416752 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 416752 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 416693 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 416692 TACTAACGAGGA 416681 >seq253 Length=5273209 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 4371743 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 4371684 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 4371683 CCCCGACGGGGAG 4371671 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 4371742 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4371683 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 4371682 CCCGACGGGGAGG 4371670 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 4371671 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 4371730 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 4371731 TACTAACGAGGA 4371742 >seq48 Length=15315231 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 851749 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 851808 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 851809 CCCGACGGGGAG 851820 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 851749 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 851808 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 851809 CCCGACGGGGAGG 851821 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 851820 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 851761 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 851760 TACTAACGAGGAT 851748 >seq44 Length=16276492 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 16196914 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 16196855 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 16196854 CCCCGACGGGGAGG 16196841 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 16196913 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 16196854 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 16196853 CCCGACGGGGAG 16196842 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 16196842 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 16196901 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 16196902 TACTAACGAGGA 16196913 >seq430 Length=2872292 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 |||||||||||||||||||||| ||||| |||| ||||| | |||||||| ||||||||| Sbjct 988394 CAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACTGGGGTTCGA 988453 Query 11786 TTCCCCGACGAGGAGGGAG 11804 ||||||| || ||||| || Sbjct 988454 TTCCCCGCCGGGGAGGCAG 988472 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||| |||||||||||| Sbjct 988397 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACTGGGGTTCGATTC 988456 Query 8718 CCCGACGAGGA-GCAGAGGCC 8737 |||| || ||| ||||| ||| Sbjct 988457 CCCGCCGGGGAGGCAGACGCC 988477 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| ||||||||| |||||||| | |||| |||||||| | ||||||| Sbjct 988468 CTCCCCGGCGGGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 988409 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 988408 TACTAACGAGGA 988397 >seq127 Length=8664957 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 |||||||||||||||||||||| ||||| |||| ||||| | | ||||||| |||||||| Sbjct 8362881 CAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCAGGGTTCGA 8362822 Query 11786 TTCCCCGACGAGGAGGGAG 11804 |||||||| | ||||| || Sbjct 8362821 TTCCCCGATGGGGAGGCAG 8362803 Score = 93.3 bits (102), Expect = 6e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | | ||||||| ||||||||||| Sbjct 8362878 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCAGGGTTCGATTC 8362819 Query 8718 CCCGACGAGGA-GCAGAGGCC 8737 ||||| | ||| ||||| ||| Sbjct 8362818 CCCGATGGGGAGGCAGACGCC 8362798 >seq12 Length=25310607 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 || |||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||| Sbjct 23264354 CCTGTCCTCATTAGTATAGTGGTGAGTATCCCCGCCTGTCATGCGGGAGACCGGGGTTCG 23264295 Query 11785 ATTCCCCGACGAGGAGG 11801 ||||||||||| ||||| Sbjct 23264294 ATTCCCCGACGGGGAGG 23264278 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||| Sbjct 23264350 TCCTCATTAGTATAGTGGTGAGTATCCCCGCCTGTCATGCGGGAGACCGGGGTTCGATTC 23264291 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 23264290 CCCGACGGGGAG 23264279 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| |||| |||||||| | ||||||| Sbjct 23264279 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTA 23264338 Query 139413 TACTAACGAGGA 139424 |||||| ||||| Sbjct 23264339 TACTAATGAGGA 23264350 >seq580 Length=1667376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 |||||||| |||||||||||||| ||||| |||| ||||| ||| | ||||| ||||||| Sbjct 443569 CCAGTCCTAGTTAGTATAGTGGTGAGTATTCCCGCCTGTCACACTGAAGACCAGGGTTCG 443510 Query 11785 ATTCCCCGACGAGGAGGGAG 11804 ||||||||| | ||||| || Sbjct 443509 ATTCCCCGAAGGGGAGGCAG 443490 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||| |||||||||||||| |||||||||| ||||| ||| | ||||| ||||||||||| Sbjct 443565 TCCTAGTTAGTATAGTGGTGAGTATTCCCGCCTGTCACACTGAAGACCAGGGTTCGATTC 443506 Query 8718 CCCGACGAGGAG 8729 ||||| | |||| Sbjct 443505 CCCGAAGGGGAG 443494 >seq172 Length=7430080 Score = 89.7 bits (98), Expect = 7e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || |||||| ||||||||||||| ||||| |||| ||||| | | |||||||||||| || Sbjct 6228686 TTTTTCCTCATTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCGGGGTGCG 6228627 Query 8714 ATTCCCCGACGAGGA-GCAGA 8733 ||||||| ||| ||| ||||| Sbjct 6228626 ATTCCCCAACGGGGAGGCAGA 6228606 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||| ||||||||||||| ||||| |||| ||||| | | |||||||||||| |||||| Sbjct 6228682 TCCTCATTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCGGGGTGCGATTC 6228623 Query 11789 CCCGACGAGGAGGGAG 11804 ||| ||| ||||| || Sbjct 6228622 CCCAACGGGGAGGCAG 6228607 >seq107 Length=10112982 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||| |||||||||||||| ||||| |||| ||||| | ||||||||| ||||| |||| Sbjct 8612155 TTCCTTGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTTGATT 8612096 Query 8717 CCCCGACGAGGAG 8729 |||||| | |||| Sbjct 8612095 CCCCGATGGGGAG 8612083 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||| |||||||||||||| ||||| |||| ||||| | ||||||||| ||||| ||||| Sbjct 8612154 TCCTTGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTTGATTC 8612095 Query 11789 CCCGACGAGGAGG 11801 ||||| | ||||| Sbjct 8612094 CCCGATGGGGAGG 8612082 >seq6 Length=31634872 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 8661 TCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCC 8720 |||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| |||| Sbjct 12129253 TCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTCCCT 12129312 Query 8721 GAC-GAGGAGCAGA 8733 ||| ||| ||||| Sbjct 12129313 GACGGAGAGGCAGA 12129326 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11733 TCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCC 11791 |||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| |||| Sbjct 12129253 TCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGACTCCCT 12129312 Query 11792 GACGAGGAGGGAG 11804 |||| |||| || Sbjct 12129313 GACGGAGAGGCAG 12129325 >seq72 Length=12434827 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 8665 TAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACG 8724 |||||||||||| ||||| |||| ||||| | ||||||| ||||||||||||||||||| Sbjct 3315234 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGTGGGAGACTGGGGTTCGATTCCCCGACG 3315293 Query 8725 AGGAGC 8730 ||||| Sbjct 3315294 GGGAGC 3315299 >seq74 Length=12003515 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||| ||||||||||||| ||||| ||| ||||| |||||||||||||||||| || Sbjct 7609889 TTCCTCATTAGTATAGTGGTAAGTATCTCCGCCTGTCACACGGGAGACCGGGGTTCAGTT 7609948 Query 8717 CCCCGACGAGGAG 8729 |||| || |||| Sbjct 7609949 CCCCAACAGGGAG 7609961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652661113954960