Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq48 131 2e-25 seq139 118 1e-21 seq662 107 2e-18 seq368 104 2e-17 seq113 100 3e-16 >seq48 Length=15315231 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 866193 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 866134 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| |||||||| ||||||||||| ||||||| |||| Sbjct 866133 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATCTTTGCCTTG 866074 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||| | ||| || || ||||| || Sbjct 866073 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTC 866014 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 866013 TTCACGAAAATCTGCAT 865997 Score = 125 bits (138), Expect = 7e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || ||| Sbjct 865965 GTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 865906 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| |||||||||||||| ||||| ||||||| |||| Sbjct 865905 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 865846 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| || || ||||||| || Sbjct 865845 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTC 865786 Query 133644 TTTACGAAAATCTG 133657 || ||||| ||||| Sbjct 865785 TTCACGAAGATCTG 865772 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || || | | | || || ||||| || || Sbjct 866982 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCA-TCTTCCAGCTGTTTCCC 866924 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| ||||||||||||||||| || ||||||| ||| Sbjct 866923 AGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTT 866864 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | ||||| || || | ||||| || || |||||||| || Sbjct 866863 GACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAGGGT 866804 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 866803 CTTCACGAAGATCTGCAT 866786 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 || ||||||||| |||||||||||||||||||| ||||||| ||||| | ||||| Sbjct 865663 CCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAAT 865604 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 ||||| ||||||| || || | ||| | ||| || || ||||| || || || || || Sbjct 865603 GGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACAAAGAT 865544 Query 133655 CTGCAT 133660 |||||| Sbjct 865543 CTGCAT 865538 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 || ||||||||| |||||||||||||||||||| ||||||| ||||| | ||||| Sbjct 866350 CCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAAT 866291 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 ||||| ||||||| || || | || | ||| || |||||||| || || ||||| || Sbjct 866290 GGTGTCACTGGGCTCTACTTCAAGAGTAATGGTCTTACCGGTCAGGGTCTTCACGAAGAT 866231 Query 133655 CTGCAT 133660 ||||| Sbjct 866230 TTGCAT 866225 >seq139 Length=8626845 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| |||||||| || | ||| | | | || || | |||||||| Sbjct 1931003 GGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAACTGCTTGC 1930945 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || |||||||| || || |||||| || Sbjct 1930944 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCTTGGATCTTAGCCT 1930885 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || || |||||||||| || | ||||| ||| ||||| || || | Sbjct 1930884 TCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTTAGGG 1930825 Query 133642 TTTTTACGAAAATCTGCAT 133660 | |||||||| |||||||| Sbjct 1930824 TCTTTACGAAGATCTGCAT 1930806 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| |||||||| || | ||| | | | || || |||||||||| Sbjct 1931231 GGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1931173 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||| ||||| ||||| || ||||| || || |||||| || Sbjct 1931172 CTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCT 1931113 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || || |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 1931112 TCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1931053 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1931052 TCTTCACAAAGATCTGCAT 1931034 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || | || | | | || || |||||||||| Sbjct 1931459 GGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCA-TCTTCCAGCTGCTTGC 1931401 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||| ||||| ||||| || ||||| || || |||||| || Sbjct 1931400 CTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCT 1931341 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || || |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 1931340 TCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1931281 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1931280 TCTTCACAAAGATCTGCAT 1931262 >seq662 Length=1284721 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || | ||| || || || | || || ||||| || || Sbjct 539907 GTGGACTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCATCTTCCAGCTGTTTCCCA 539966 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| ||||||||||||||||| || ||||||| |||| Sbjct 539967 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTG 540026 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | | | | ||| || | |||||| || Sbjct 540027 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGTTAATGGTCTTACTGGTCAGGGTC 540086 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 540087 TTCACAAAGATCTGCAT 540103 >seq368 Length=3467158 Score = 104 bits (114), Expect = 2e-17 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || |||||||| | | | | | ||||| |||| |||| Sbjct 925342 GGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCA-TCCTCTAGCTCTTTGC 925284 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 || | |||| || ||||||||||| ||||| ||||| |||||| | ||| ||| || Sbjct 925283 CCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGAT-TTTGGCT 925225 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||| | ||||| |||||||||| || | |||| ||| ||||| ||| Sbjct 925224 TTGACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTTCAAG 925165 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 925164 GTCTTCACAAAGATCTGCAT 925145 >seq113 Length=9792114 Score = 100 bits (110), Expect = 3e-16 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133462 TGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTG 133520 ||||||||||||||||| | |||| ||| | ||| | | | ||||| || || || Sbjct 4493444 TGGTGGACTCTTTCTGTGTGTTGTCATCTGAGAGTGTGTGGCCA-TCCTCCAGTTGTGTG 4493502 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 ||| | |||| || ||||||||||| || |||||||| |||||||| ||| ||| || Sbjct 4493503 CCCACAAAAATCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGAT-TTTGGC 4493561 Query 133581 -TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 |||| | || | ||||| |||| || || | || |||| ||| ||||| ||||| Sbjct 4493562 TTTGACATTCTTGATGGTGTCACTGGGATCAACCTTGAGAGTGATGGTCTTGCCCGTCAG 4493621 Query 133640 AGTTTTTACGAAAATCTGCAT 133660 || || || || |||| ||| Sbjct 4493622 GGTCTTCACAAAGATCTACAT 4493642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483284783515160