Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq48 131 2e-25
seq139 118 1e-21
seq662 107 2e-18
seq368 104 2e-17
seq113 100 3e-16
>seq48
Length=15315231
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||||||||| || ||||| || || ||| | || || ||||| || ||
Sbjct 866193 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 866134
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| | || | || ||||||||| |||||||| ||||||||||| ||||||| ||||
Sbjct 866133 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATCTTTGCCTTG 866074
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||||| ||||| ||||||| || || | ||| | ||| || || ||||| ||
Sbjct 866073 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTC 866014
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 866013 TTCACGAAAATCTGCAT 865997
Score = 125 bits (138), Expect = 7e-24
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||||||||| || ||||| || || ||| | || || ||||| || |||
Sbjct 865965 GTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 865906
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| | || | || ||||||||| |||||||||||||| ||||| ||||||| ||||
Sbjct 865905 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 865846
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||||| ||||| ||||||| || || | ||||| || || ||||||| ||
Sbjct 865845 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTC 865786
Query 133644 TTTACGAAAATCTG 133657
|| ||||| |||||
Sbjct 865785 TTCACGAAGATCTG 865772
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||||||||| || ||||| || || || | | | || || ||||| || ||
Sbjct 866982 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCA-TCTTCCAGCTGTTTCCC 866924
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || | || ||||||||| ||||||||||||||||| || ||||||| |||
Sbjct 866923 AGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTT 866864
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||||| ||||| | ||||| || || | ||||| || || |||||||| ||
Sbjct 866863 GACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAGGGT 866804
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 866803 CTTCACGAAGATCTGCAT 866786
Score = 102 bits (112), Expect = 8e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594
|| ||||||||| |||||||||||||||||||| ||||||| ||||| | |||||
Sbjct 865663 CCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAAT 865604
Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654
||||| ||||||| || || | ||| | ||| || || ||||| || || || || ||
Sbjct 865603 GGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACAAAGAT 865544
Query 133655 CTGCAT 133660
||||||
Sbjct 865543 CTGCAT 865538
Score = 102 bits (112), Expect = 8e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594
|| ||||||||| |||||||||||||||||||| ||||||| ||||| | |||||
Sbjct 866350 CCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAAT 866291
Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654
||||| ||||||| || || | || | ||| || |||||||| || || ||||| ||
Sbjct 866290 GGTGTCACTGGGCTCTACTTCAAGAGTAATGGTCTTACCGGTCAGGGTCTTCACGAAGAT 866231
Query 133655 CTGCAT 133660
|||||
Sbjct 866230 TTGCAT 866225
>seq139
Length=8626845
Score = 118 bits (130), Expect = 1e-21
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| |||||||| || | ||| | | | || || | ||||||||
Sbjct 1931003 GGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAACTGCTTGC 1930945
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||| || || |||||||| || || |||||| ||
Sbjct 1930944 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCTTGGATCTTAGCCT 1930885
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | || || |||||||||| || | ||||| ||| ||||| || || |
Sbjct 1930884 TCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTTAGGG 1930825
Query 133642 TTTTTACGAAAATCTGCAT 133660
| |||||||| ||||||||
Sbjct 1930824 TCTTTACGAAGATCTGCAT 1930806
Score = 113 bits (124), Expect = 4e-20
Identities = 146/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| |||||||| || | ||| | | | || || ||||||||||
Sbjct 1931231 GGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1931173
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||| ||||| ||||| || ||||| || || |||||| ||
Sbjct 1931172 CTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCT 1931113
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | || || |||||||||| || | ||||| ||| ||||| ||||| |
Sbjct 1931112 TCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1931053
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 1931052 TCTTCACAAAGATCTGCAT 1931034
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || ||||| || | || | | | || || ||||||||||
Sbjct 1931459 GGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCA-TCTTCCAGCTGCTTGC 1931401
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||| ||||| ||||| || ||||| || || |||||| ||
Sbjct 1931400 CTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCT 1931341
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | || || |||||||||| || | ||||| ||| ||||| ||||| |
Sbjct 1931340 TCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 1931281
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 1931280 TCTTCACAAAGATCTGCAT 1931262
>seq662
Length=1284721
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||||||||| || | ||| || || || | || || ||||| || ||
Sbjct 539907 GTGGACTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCATCTTCCAGCTGTTTCCCA 539966
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| | || | || ||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct 539967 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTG 540026
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||||| ||||| ||||||| || || | | | | ||| || | |||||| ||
Sbjct 540027 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGTTAATGGTCTTACTGGTCAGGGTC 540086
Query 133644 TTTACGAAAATCTGCAT 133660
|| || || ||||||||
Sbjct 540087 TTCACAAAGATCTGCAT 540103
>seq368
Length=3467158
Score = 104 bits (114), Expect = 2e-17
Identities = 146/200 (73%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||||||||| || |||||||| | | | | | ||||| |||| ||||
Sbjct 925342 GGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCA-TCCTCTAGCTCTTTGC 925284
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580
|| | |||| || ||||||||||| ||||| ||||| |||||| | ||| ||| ||
Sbjct 925283 CCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGAT-TTTGGCT 925225
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|||| | ||| | ||||| |||||||||| || | |||| ||| ||||| |||
Sbjct 925224 TTGACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTTCAAG 925165
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || || || ||||||||
Sbjct 925164 GTCTTCACAAAGATCTGCAT 925145
>seq113
Length=9792114
Score = 100 bits (110), Expect = 3e-16
Identities = 146/201 (73%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 133462 TGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTG 133520
||||||||||||||||| | |||| ||| | ||| | | | ||||| || || ||
Sbjct 4493444 TGGTGGACTCTTTCTGTGTGTTGTCATCTGAGAGTGTGTGGCCA-TCCTCCAGTTGTGTG 4493502
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
||| | |||| || ||||||||||| || |||||||| |||||||| ||| ||| ||
Sbjct 4493503 CCCACAAAAATCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGAT-TTTGGC 4493561
Query 133581 -TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639
|||| | || | ||||| |||| || || | || |||| ||| ||||| |||||
Sbjct 4493562 TTTGACATTCTTGATGGTGTCACTGGGATCAACCTTGAGAGTGATGGTCTTGCCCGTCAG 4493621
Query 133640 AGTTTTTACGAAAATCTGCAT 133660
|| || || || |||| |||
Sbjct 4493622 GGTCTTCACAAAGATCTACAT 4493642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483284783515160
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