Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq5 228 9e-55 seq184 210 3e-49 >seq5 Length=32993971 Score = 228 bits (252), Expect = 9e-55 Identities = 600/910 (66%), Gaps = 7/910 (1%) Strand=Plus/Minus Query 162076 AGATACTCGTCTAGACACTGGACCGCGAACACGTCT-CGTTCCTCATCGAACTTGTTCGC 162134 |||| ||| || | |||||||| || || | ||| | || | || ||||| || || Sbjct 9425181 AGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATTTGTG-TCAAACTTATTGGC 9425123 Query 162135 GAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAACACGCACAC 162194 |||| ||| || || | || ||||| || | ||||| | || || || ||||| Sbjct 9425122 AAACAAGTGGTGT---TTGTGTAACATCCAGTTCAAGTCCCCTGCCCCAAAAACACACAC 9425066 Query 162195 GGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACATCCCCCTC 162254 || |||||||| | |||| ||| || || || |||| || | | ||||| || || Sbjct 9425065 AGAGCGCACGTGGATGCCGTCGCAGGGTGGGTAAGGGGCGCCCTTGGAAACATCGCCTTC 9425006 Query 162255 GTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTA 162314 | || ||||| || || ||||| | || | |||||||| || |||| || |||| Sbjct 9425005 AAAATAGTGCCATTTGACAAACCTTGCAATCGAATGCATGTCAGACATGTCATATTTGTG 9424946 Query 162315 CACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTC 162374 ||| |||| || ||||| || | || | || || | || ||||| || | ||| Sbjct 9424945 GCTTGAGGGCAGTGCACCAGGGACTTCAGGGATCCTTTGAATGGTGGCCCAGAGATATTC 9424886 Query 162375 GTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT-ATCGTATA 162433 || || || || || || |||| ||| ||||| |||| ||| |||| || || Sbjct 9424885 ATCAGGGCTGTATGTGTCTTTCGCCCATTCCATAAACTTG-TGAATTTTTTCATTTCCTA 9424827 Query 162434 GAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTA 162493 | | || || ||| ||| | || | ||| || || || || ||||| | |||| Sbjct 9424826 GCACATATCCCACATAGTTCCTACTGACCACAAAATAGGCACTGCCTGAAAAAATGGGTG 9424767 Query 162494 TGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCA 162553 | | |||||| || ||||||| || ||||| | | | || | | ||| Sbjct 9424766 TTTCGAGAGGAGGACGCATTTTGTCTGCTCCTGTGTTTGTCAGCTTCCCGTTGATGACTT 9424707 Query 162554 CGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTCTAGACTGT 162613 | | | ||| ||||||| || ||||||| ||| | || | || || ||| Sbjct 9424706 CATAACGCTTTTTCCACCTTTCCTCTTTACTGGCTGACATTTTCTCAGATTCAAGGTTGT 9424647 Query 162614 TACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGT 162673 | |||| || | ||| |||| | || || || || ||||| |||| ||||| | Sbjct 9424646 TTTCACCCATTAACGACTTGAGCTTCCTGACGATTTCCAGGTTGGTTTTAATAGGAAAAT 9424587 Query 162674 CGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTA 162733 | |||| || ||||| || | || ||||| | | || | || ||| || |||| | Sbjct 9424586 CCATGCCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCTGTAGAGGTCCTTCA 9424527 Query 162734 GACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAG 162793 || || || || ||||||||||| ||||| || || ||||| || |||||| || Sbjct 9424526 TGCAATTGAGGTCTGCCTGGACGCGGCTCCATGAAGCATACACCACATTCTCCAGCCGGC 9424467 Query 162794 TGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACATCG 162853 |||| |||||||| || |||||| || | || ||||| || || | | || Sbjct 9424466 TGGCTACAAAGACGTTACTGAAACAGGATGCAATGCCCATTACAGCACCTAAAAAGGAAC 9424407 Query 162854 GGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCA 162913 ||| | || | || || || | ||| || | ||||||||| |||||||||||||| Sbjct 9424406 TGTCGGACTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCCTCA 9424347 Query 162914 GTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 | | || |||| ||| || || || ||||| ||||| |||||||| || | || |||| Sbjct 9424346 GGAGCCTGTCGAGCATTTCAATTTTGTGGTGAACCACTATAGAATATGCGAGCGGAAACT 9424287 Query 162974 CAGCCTCCTC 162983 | ||||| || Sbjct 9424286 CTGCCTCTTC 9424277 >seq184 Length=6952770 Score = 210 bits (232), Expect = 3e-49 Identities = 246/331 (74%), Gaps = 1/331 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| || || || || || || || ||||| ||||| || | | Sbjct 4689496 CATAGAGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 4689437 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| || || ||||||| ||| || ||||| || || | || || | ||| Sbjct 4689436 ACATGTAACACCCCTCATCCTCCAGGGTAGTATTCCAGAAGGTTATAGTGGAGTCATTGA 4689377 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 ||||||| | ||| ||||| |||| |||||| || |||||| || ||||| || | | Sbjct 4689376 GTCCGAGATACGTGATGTTTACCCTGTCCTTATAGCCAGGCTGAACCACAACCCCATTTT 4689317 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||| ||||| ||| | ||||||||||| |||||||| || |||| Sbjct 4689316 TCTTGCTGAATGTGACCATATTTTCTGGGTTTGTAGCCTTTATTTTCTGCCATGTCACTA 4689257 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | || ||||| ||||| ||||||| |||||| |||||| || | | Sbjct 4689256 TCAAGACTTCCTGGTAAGTTTGCAGAGAACATCTTAGGGAAGCATGTGTGTGCAGAAGCT 4689197 Query 172071 CCCTTTCGTCTTGCGTTACCACCTGTCCCTG 172101 | |||| || || || |||| || ||||| Sbjct 4689196 CTATTTCATCATGGGTCTCCACTTG-CCCTG 4689167 Score = 120 bits (132), Expect = 4e-22 Identities = 178/249 (71%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| ||| || |||||||||| || | || ||||| ||||| |||| Sbjct 4692229 ACAGTTTGCCTGAAGTCAGTCACAGTCCCCAGATGCAGCACCTTGCAGATCACTTCCT-- 4692172 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 ||||||| ||||| | ||||||||| || || || | ||| || ||||| || ||||| Sbjct 4692171 -TTCCCACCTGACTCTCAGGATCTTTGACCTGCAGGACGCTGGTGACAGAGGTCGTCCCA 4692113 Query 171623 TTACGATGTAGAACGGTTTT-AGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | || ||| | | | ||| ||||| || || || || || | || ||||| | Sbjct 4692112 TTGGGGTG-AGATAGACTCTCAGTGCTATTCTCAATCCCTGACCCAGTCACCTTCCAGGA 4692054 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 || | || || || | ||||||||||| || || || ||||| ||||| |||| Sbjct 4692053 GATTATGGGGGCAGGGCGGGCAGTAGCAGAACAGGTGATATTTAAGTGGTCTTCAGAGAA 4691994 Query 171742 CTCATAGTG 171750 | |||||| Sbjct 4691993 TTTATAGTG 4691985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578269250926400