Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq48 107 1e-18 seq368 86.0 4e-12 seq139 86.0 4e-12 >seq48 Length=15315231 Score = 107 bits (118), Expect = 1e-18 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || ||||||| || | |||| || |||||| |||||| || ||| Sbjct 866007 AAAATCTGCATTCCCCCTCTCAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATG 865948 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || || ||||| | || |||| ||||| || ||||| ||||| | |||| Sbjct 865947 TTGTAGTCCGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGC 865888 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | ||||||||||| || || || | |||| || | |||||| Sbjct 865887 TGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTC 865829 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 || | || || |||| ||||| || ||||| || || || || || |||||||| Sbjct 865828 ACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | ||||| || |||||| |||||| || |||||||| || | Sbjct 867014 CACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 866955 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || ||| | || |||| ||||| || ||||| ||||| | |||||| || | | Sbjct 866954 ACAGGGTACGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAG 866895 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | ||||| || || || || || | |||| ||| |||||| || | || Sbjct 866894 GGATGCCTTCCTTATCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTAGGCTCT 866836 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| || | || || || ||||||||||| Sbjct 866835 ACTTCAAGGGTGATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 866786 >seq368 Length=3467158 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| |||||| || ||||||||||| ||||| | || | || || | | | Sbjct 925347 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCTCT 925288 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||||||| ||||||||| || | || | || || ||| | ||||| Sbjct 925287 TTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTTT- 925229 Query 33667 TGTTTCAACATAGT-CACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || |||| | || |||||| || | ||||| |||| ||||| || || || | Sbjct 925228 GGCTTTGACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTT 925169 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || |||||||||||||| Sbjct 925168 CAAGGTCTTCACAAAGATCTGCAT 925145 >seq139 Length=8626845 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | || | || || || |||||| || || ||||| || || Sbjct 1931033 ACCACCCCTCAGACGAAGGACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGA 1930974 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| || || || ||||| || | | |||||| || | || Sbjct 1930973 AAGAGTGCGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1930914 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || || || |||| ||| || | ||| || || | |||| Sbjct 1930913 AATGCCTTCTTTATCTTGGATCTTAGCCTTCA-CATTCTCGATGGTATCACTGGGCTCCA 1930855 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||||| || ||||| ||||||||||| Sbjct 1930854 CCTCCAGGGTGATGGTCTTGCCTGTTAGGGTCTTTACGAAGATCTGCAT 1930806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328613827145280