Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq139 102 2e-16 seq101 95.1 3e-14 seq48 86.0 1e-11 seq107 84.2 5e-11 >seq139 Length=8626845 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || ||||| |||| ||||| ||| || |||| Sbjct 1930821 AAGACCCTAACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGATACCATCGAGAAT 1930880 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| ||| || ||| || || || ||||| Sbjct 1930881 GTGAAGGCTAAGATCCAAGATAAAGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 1930940 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | ||| | | || ||||| ||||||||||||| Sbjct 1930941 GCAGGCAAGCAGTTGGAAGATGGCCGCACTCTTTCTGACTACAATATCCAGAAAGAGTCG 1931000 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 1931001 ACCCTGCACCTTGT 1931014 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| |||| ||||| ||| Sbjct 1931265 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGAT 1931324 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || |||||||| ||| || ||| || Sbjct 1931325 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAACAG 1931384 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||||||||| | ||| | | || |||||| || Sbjct 1931385 AGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATC 1931444 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||| || || ||||||||| Sbjct 1931445 CAGAAAGAGTCAACCCTGCACCTTGTT 1931471 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| |||| ||||| ||| Sbjct 1931037 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGAT 1931096 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || |||||||| ||| || ||| || Sbjct 1931097 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAACAG 1931156 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||||||||| | ||| | | || ||||| || Sbjct 1931157 AGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAATATC 1931216 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || |||||||| Sbjct 1931217 CAGAAAGAGTCAACCCTGCACCTTGT 1931242 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || || ||||||||||||| ||| ||||||| | ||| | ||||||||| Sbjct 1931242 ACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1931183 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || || ||||| |||| ||||| Sbjct 1931182 AGCTGCTTGCCTGCAAAGATGAGCCTCTGTTG 1931151 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||| || || ||||||||||||| || ||||||| | ||| | |||||||| Sbjct 1931471 AACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTC 1931412 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||| || || ||||| |||| ||||| Sbjct 1931411 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTG 1931379 >seq101 Length=10068975 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || | ||||| || || ||| | || || ||| || || Sbjct 9126540 CAGATTTTTGTAAAAACCCTAATGGGAAAGACCATAACTCTCGAGGTTGAACCCTCAGAT 9126599 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| |||||| ||||| || || || ||||||||| || || || Sbjct 9126600 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 9126659 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || || ||||| ||||||||||| | || ||| | || |||||| | Sbjct 9126660 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAACATT 9126719 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTC 206389 || || || | |||||| | || | ||||||| || Sbjct 9126720 CAAAAGGAATACACTCTTTATCTCATGTTGAGACATC 9126756 >seq48 Length=15315231 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| || || ||| || || | ||||| Sbjct 866072 GTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATCTTT 866131 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| |||||||||| | || || | || |||||| ||||||||||||| Sbjct 866132 GCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCC 866191 Query 206365 ACTCTTCACCTTGTT 206379 ||||| ||||| ||| Sbjct 866192 ACTCTGCACCTGGTT 866206 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| |||||||| || || ||| || || | ||||| Sbjct 865844 GTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTT 865903 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | || || | || |||||| ||||||||||||| Sbjct 865904 GCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCGGACTACAACATCCAGAAAGAGTCC 865963 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 865964 ACTCTGCACCTGGT 865977 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | ||||| || | |||||| | || Sbjct 866801 AAGACCCTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCTAGTGACACCATTGAGAAT 866860 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| || || ||| || || | ||||| Sbjct 866861 GTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTT 866920 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| ||||||||||| | || || | || |||||| ||||||||||||| Sbjct 866921 GCTGGGAAACAGCTGGAAGATGGACGTACCCTGTCTGACTACAACATCCAGAAAGAGTCC 866980 Query 206365 ACTCTTCAC 206373 ||||| ||| Sbjct 866981 ACTCTGCAC 866989 >seq107 Length=10112982 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 206260 CAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTG 206319 ||||| || ||||||||| || || || ||||| |||||||| || ||||| || Sbjct 238233 CAAGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTCGCTGGTAAGCAACTG 238174 Query 206320 GAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||| | ||| | || |||||| | || || |||| |||||| |||||| Sbjct 238173 GAAGATGGATATATCTTGTCTGACTACAACATTCAAAAGGAGTGCACTCTTTGCCTTGTG 238114 Query 206380 TTGAGACTT 206388 ||||||||| Sbjct 238113 TTGAGACTT 238105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181479966943789