Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq48 102 8e-17 seq139 93.3 4e-14 >seq48 Length=15315231 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| || |||||| Sbjct 867004 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACG 866945 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | |||| | | ||| || || ||||| |||||||| Sbjct 866944 TCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTC 866885 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| || ||| || | | || | || || | ||||| ||||| | || Sbjct 866884 CTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGT 866825 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || ||||| ||||| || || | ||| |||||||| Sbjct 866824 GATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 866786 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| |||| | Sbjct 866190 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCA 866131 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| || ||||| || || || ||| || | Sbjct 866130 AAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACA 866071 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| ||||| | || | || ||||||||||| || || Sbjct 866070 TTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTC 866011 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 866010 ACGAAAATCTGCAT 865997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | | Sbjct 865962 GACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCA 865903 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| ||||||||||| || || ||| || | Sbjct 865902 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACA 865843 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| ||||| | || | || ||||| |||| || || Sbjct 865842 TTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTC 865783 Query 132110 ATGAAAATCTG 132120 | ||| ||||| Sbjct 865782 ACGAAGATCTG 865772 >seq139 Length=8626845 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||| | ||| | || | | |||||||||| || ||||||||||| | ||||| Sbjct 1931480 CAGGCGAAGAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACG 1931421 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | |||||| || ||||| || ||||| Sbjct 1931420 GCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTC 1931361 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || || |||| | || | ||||| | |||||||| || | || Sbjct 1931360 TTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGT 1931301 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || |||||||| || || | || |||||||| Sbjct 1931300 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||||||||| || || |||||||| | || || |||||| ||||| || || | Sbjct 1931229 TTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTG 1931170 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| || | |||||| || ||||| || ||||||||||| || || |||| Sbjct 1931169 CAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCA 1931110 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||| | |||||||| || | || | || || |||||||| || | Sbjct 1931109 CATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCT 1931050 Query 132108 TTATGAAAATCTGCAT 132123 | | || |||||||| Sbjct 1931049 TCACAAAGATCTGCAT 1931034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476477099481240