Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq684 107 6e-20 seq1358 104 7e-19 seq3373 100 9e-18 seq132 100 9e-18 seq48 100 9e-18 seq34 100 9e-18 seq4871 98.7 3e-17 seq919 98.7 3e-17 seq466 98.7 3e-17 seq117 98.7 3e-17 seq168 95.1 4e-16 seq193 91.5 5e-15 seq169 87.8 6e-14 seq17 87.8 6e-14 >seq684 Length=1121939 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 608995 TGGCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 609054 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 609055 TCCCGGGTTTCGGC 609068 >seq1358 Length=102310 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 92249 GCCGAAATAGCTCAGTTGGGAGAGCTTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 92190 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 92189 CCGGGTTTCGGC 92178 Score = 102 bits (112), Expect = 3e-18 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 13660 GGCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 13601 Query 2828 CCCGGGCTT 2836 ||| || || Sbjct 13600 CCCAGGTTT 13592 Score = 100 bits (110), Expect = 9e-18 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 69884 GCTGGAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 69825 Query 2829 CCGGG 2833 ||||| Sbjct 69824 CCGGG 69820 Score = 80.6 bits (88), Expect = 8e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 ||||| | ||||| ||||||||| |||| ||||| ||||||||||||||||||||| | Sbjct 68047 CTGAAATGCCTCAGCTGGGAGAGCGTTAGCCTGAAAATCTAAAGGTCCCTGGTTCAATTC 67988 Query 2830 CGGGCTTCA 2838 |||| |||| Sbjct 67987 CGGGTTTCA 67979 >seq3373 Length=12152 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 11352 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 11411 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 11412 CCGGGTTT 11419 >seq132 Length=8627105 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 5915480 ATGGCCAAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 5915539 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 5915540 ATCCCGGGTTTCGGC 5915554 >seq48 Length=15315231 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 853438 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 853497 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 853498 CCCGGGTTTCGGC 853510 >seq34 Length=18184965 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 17238538 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 17238597 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 17238598 CCGGGTTT 17238605 >seq4871 Length=8464 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 5900 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5841 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5840 CCGGGTTTCGGC 5829 >seq919 Length=593393 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 19052 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 18993 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 18992 CCGGGTTTCGGC 18981 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 296143 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 296084 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 296083 CCGGGTTTCGGC 296072 >seq466 Length=2274592 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1325099 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1325040 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1325039 CCGGGTTTCGGC 1325028 >seq117 Length=9692270 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4554801 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4554860 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4554861 CCGGGTTTCGGC 4554872 >seq168 Length=7504001 Score = 95.1 bits (104), Expect = 4e-16 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||| | Sbjct 4699292 TAGCCCAGTTGGGAGAGCATTAGACTGAAGAGCTAAAGGTCCCTGGTTCGATCCCGGGTT 4699233 Query 2836 TCAGC 2840 ||||| Sbjct 4699232 TCAGC 4699228 >seq193 Length=6660286 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 6371072 GCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTTTATC 6371131 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 6371132 CCGGGTTT 6371139 >seq169 Length=7442033 Score = 87.8 bits (96), Expect = 6e-14 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||| ||||||||||||| |||||||| ||||||||| | Sbjct 3152163 GCTGGAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATGTAAAGGTCTCTGGTTCAATC 3152222 Query 2829 CCG 2831 ||| Sbjct 3152223 CCG 3152225 >seq17 Length=22982105 Score = 87.8 bits (96), Expect = 6e-14 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||||||| ||| | || | ||||||||||||||||||||||||||||||||||||| Sbjct 9926132 ATGGCTGAAATAGTGCCATTTGAAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 9926073 Query 2826 ACCCCGGGCTTCA 2838 | || ||| |||| Sbjct 9926072 ATCCTGGGTTTCA 9926060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15845697952305