Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq184 230 3e-55 seq30 163 3e-35 seq311 131 2e-25 seq13 118 1e-21 >seq184 Length=6952770 Score = 230 bits (254), Expect = 3e-55 Identities = 244/322 (76%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || |||| |||||| ||||| | | ||| ||| |||| | || ||||| | ||| || Sbjct 4689172 CAAGTGGAGACCCATGATGAAATAGAGCTTCTGCACACACATGCTTCCCTAAGATGTTCT 4689231 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| |||| ||||| || |||| || || ||||||||||| ||| | || | ||| Sbjct 4689232 CTGCAAACTTACCAGGAAGTCTTGATAGTGACATGGCAGAAAATAAAGGCTACAAACCCA 4689291 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || || ||| | || || ||||| | | ||||| ||||| ||||| | ||||||||| Sbjct 4689292 GAAAATATGGTCACATTCAGCAAGAAAAATGGGGTTGTGGTTCAGCCTGGCTATAAGGAC 4689351 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 | | |||||||||| | || |||||| | |||| || || || || |||||||| ||| Sbjct 4689352 AGGGTAAACATCACGTATCTCGGACTCAATGACTCCACTATAACCTTCTGGAATACTACC 4689411 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| |||||||| |||| |||||||| || |||||||| |||||||| ||||| Sbjct 4689412 CTGGAGGATGAGGGGTGTTACATGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCA 4689471 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || |||||||||||||||| Sbjct 4689472 GGAAAAGCCTGCCTCACCCTCT 4689493 Score = 183 bits (202), Expect = 4e-41 Identities = 209/278 (75%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || | || || |||||||| | ||| |||||| | || ||||||||| Sbjct 4691964 GTACAGCCCACAGTATCCCTTCACTATAAATTCTCTGAAGACCACTTAAATATCACCTGT 4692023 Query 171453 TCTGCCAATGCCCGCCC-GCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGA 171511 ||||| | ||||||||| ||| || | || | |||||| | | ||||||| ||||| Sbjct 4692024 TCTGCTACTGCCCGCCCTGCCCCCATA-ATCTCCTGGAAGGTGACTGGGTCAGGGATTGA 4692082 Query 171512 AAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCA 171571 || || | ||| ||| || || | ||||| || || ||||| ||||| || || || Sbjct 4692083 GAATAGCACTGAGAGTCTATCTCACCCCAATGGGACGACCTCTGTCACCAGCGTCCTGCA 4692142 Query 171572 AGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGG 171631 || ||||| || |||||||| |||||||||| || |||||| | ||| ||| ||||| Sbjct 4692143 GGTCAAAGATCCTGAGAGTCAGGTGGGAAAGGAAGTGATCTGCAAGGTGCTGCATCTGGG 4692202 Query 171632 AAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| ||| |||| ||| ||||||| ||||| |||| Sbjct 4692203 GACTGTGACTGACTTCAGGCAAACTGTGAGCAAAGGTA 4692240 >seq30 Length=19208098 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 15109598 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 15109539 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || |||||||||||||| || || |||||||||||||||||||| || ||||| |||| Sbjct 15109538 AGGCACCCCCAGGCCCATATCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 15109479 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||||| || ||||| ||||| Sbjct 15109478 CACCACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCAT 15109434 >seq311 Length=4283029 Score = 131 bits (144), Expect = 2e-25 Identities = 212/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| ||||||||||| | |||| || | ||||||| | ||||| | |||||| Sbjct 1349414 GTATTCTCTGGTGTTCATTGTTGGCCTTTTGGGCAATGTGGTAGTGATAGTGATCCTCAC 1349473 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||||| || ||||||||||||| |||| ||||| |||| || ||| Sbjct 1349474 AAAATACAAGAGGCTCAGAATTATGACCAACATCTACCTGCTCAACTTGGCGATTTCTGA 1349533 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || || |||||||||| | || ||||| |||| Sbjct 1349534 CTTGCTCTTTCTGTTCACGCTTCCATTCTGGATTCACT--ATGTTGGATGGAACAAGTGG 1349591 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 | | |||| |||||||||||| | || |||| || | | |||| Sbjct 1349592 AT----TTTTGGCCACTGCATGTGTAAGTTCCTCACAGGGCTTTATTACATAGGCTTGTA 1349647 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || ||||||||| |||| | |||||||| | || |||| |||| Sbjct 1349648 CAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACTTGGCCATTGTCCACGC 1349707 Query 8910 GGTG 8913 ||| Sbjct 1349708 TGTG 1349711 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || ||||||||| | |||| || ||||||| ||| ||| || | || |||| Sbjct 1222672 GTATTCCCTGGTGTTTGTCATTGGCCTGGTTGGCAACATCCTAGTGGTCTTGCTCTTCAT 1222613 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | || |||||||||| | |||||||| |||| ||| ||||||||||| || ||| Sbjct 1222612 GCAATATAAGAGGCTCAAAAGCATGACCAGTATCTACCTCCTCAACCTGGCCATTTCTGA 1222553 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||| | | ||| ||| || |||||||||||| ||| Sbjct 1222552 CCTGGTCTTCCTTTCCACGCTGCCCTTTTGGATTGACT 1222515 >seq13 Length=23775791 Score = 118 bits (130), Expect = 1e-21 Identities = 125/167 (75%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| || |||||||||||||| |||| ||| |||||| |||| Sbjct 21044046 AGGGTTACCTGGGTTGCCAAGCTTTGTCAGAGATGATCAAGTTCTACCTGGAGGTAGTGA 21044105 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || || || |||| ||||||||||| |||| Sbjct 21044106 TGCCACAGGCTGAGAACCAAAGT------------CCAAACATCAAGGAGCATGTGAACT 21044153 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| | ||||| || ||||| || || ||| Sbjct 21044154 CCCTGGGGGAAAAGCTGACAACCCTCAGGACAAGGCTTCGACGTTGT 21044200 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 21043703 CAAACGAAGGATCAGCTGGACAACATGTTGTTAAATGGGTCCTTGCTGGAGGACTTTAAG 21043762 Query 178233 G 178233 | Sbjct 21043763 G 21043763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| ||||| || |||||||| ||||| || || |||||||||| Sbjct 21046273 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAGTGAATTTGACATCTTCATTAACTACA 21046332 Query 178522 TAGAAGCTTACATGACAA 178539 ||||| | |||||||||| Sbjct 21046333 TAGAAACCTACATGACAA 21046350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583323828357600