Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq368 100 3e-16 seq139 95.1 1e-14 seq101 93.3 4e-14 >seq368 Length=3467158 Score = 100 bits (110), Expect = 3e-16 Identities = 145/201 (72%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | | || | || || |||| || ||| |||| Sbjct 925336 CTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCTCTTTGCCCTCAAA 925277 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 |||| ||||||||||| | ||||| || ||||||| | ||| ||| || || | | Sbjct 925276 AATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGAT-TTTGGCTTTGACAT 925218 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | ||| ||||| || | |||||||| | ||||| || || ||| |||| || |||| Sbjct 925217 TCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTTCAAGGTCTTCA 925158 Query 35724 CAAATATCTGCATTCTGTGCG 35744 |||| ||||||| ||| |||| Sbjct 925157 CAAAGATCTGCA-TCTCTGCG 925138 >seq139 Length=8626845 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 1931453 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAA 1931394 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||| ||||| | ||||| | || || ||| |||||| ||||| | | Sbjct 1931393 GATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATT 1931334 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||||||| ||||| || || || |||| || ||||| Sbjct 1931333 CTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1931274 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1931273 AAAGATCTGCAT 1931262 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || || ||||| || | | || || | || ||||||||||| || ||||| Sbjct 1931225 CTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1931166 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||| ||||| | ||||| | || || ||| |||||| ||||| | | Sbjct 1931165 GATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATT 1931106 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||||||| ||||| || || || |||| || ||||| Sbjct 1931105 CTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1931046 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1931045 AAAGATCTGCAT 1931034 >seq101 Length=10068975 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || | |||||| || | || ||||| ||||| || ||||| Sbjct 9126727 TCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAG 9126668 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| | |||||| || | ||||| | ||||| ||| |||||| ||| | | || Sbjct 9126667 ATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 9126608 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||| ||||| | || || || || ||| | | ||||| ||| Sbjct 9126607 TCTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGTCTTTCCCATTAGGGTTTTTACA 9126548 Query 35726 AATATCTGCAT 35736 || ||||| || Sbjct 9126547 AAAATCTGTAT 9126537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450666763585720