Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq48 113 5e-20 seq101 107 2e-18 >seq48 Length=15315231 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || || | || ||||| || ||||| || || || ||||||||||| Sbjct 866225 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 866166 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || |||||||| || ||||| ||||| | |||||| || || | Sbjct 866165 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAG 866106 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || ||| ||||| || | ||||| | || | Sbjct 866105 GGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 866046 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || |||||||| ||||| || | || || |||||||| |||||| Sbjct 866045 CTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACGAAAATCTGCATT 865996 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || || | || ||||| || ||||| || || || ||||||||||| Sbjct 865997 TTCCCCCTCTCAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCG 865938 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || |||||||| || ||||| ||||| | |||||| || || | Sbjct 865937 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAG 865878 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||||||||| ||||| || ||| ||||| || | ||||| | || | Sbjct 865877 GGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 865818 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTG 134710 | || || || || || |||||||| || || || ||||| || || Sbjct 865817 CTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | |||| || | ||| || ||||| || || || ||||||||||| Sbjct 867012 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 866953 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || |||||||| || ||||| ||||| | |||||| || || || Sbjct 866952 AGGGTACGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 866893 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || ||| ||||| || | ||||| | || || Sbjct 866892 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACT 866833 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || || |||||||| | || || ||||| || |||||| Sbjct 866832 TCAAGGGTGATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 866785 >seq101 Length=10068975 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 134497 GTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGA 134555 ||| ||||| ||| | || ||| |||||||||||||||||||||| | ||| ||| | Sbjct 9126753 GTCTCAACATGAGATAAAGAGTGTATTCCTTTTGAATGTTGTAGTCAGACAA-GGTACGT 9126695 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || ||||| ||||| |||| | ||||||||| || || || ||||| Sbjct 9126694 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 9126635 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||| || || | ||| || |||||||| Sbjct 9126634 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTT 9126575 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||| ||||| || ||||| || || Sbjct 9126574 ATGGTCTTTCCCATTAGGGTTTTTACAAAAATCTGTAT 9126537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505256199842680