Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq347 241 2e-58 seq10 165 1e-35 seq25 147 3e-30 seq21 134 2e-26 seq74 123 3e-23 >seq347 Length=3625835 Score = 241 bits (266), Expect = 2e-58 Identities = 598/892 (67%), Gaps = 23/892 (3%) Strand=Plus/Minus Query 39315 TAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCA 39374 |||||||||| | | || ||| | || | ||||| || | ||||| || ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 39375 ATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTA 39434 |||| ||||| || | || ||||| |||| | | || || ||||| || | Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 39435 ATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCA 39494 || | ||||| ||||| || ||||| ||||| | ||||| | | ||||| Sbjct 2988943 GTTTCAGCCTTAATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTCA 2988884 Query 39495 TTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT--ACGGC 39552 ||| || || || | | | |||| || || ||||| | ||| |||| || || Sbjct 2988883 TTCTGATAAGCTTCATAGACAAGGCCTTAGT-AGGAACTCCTATTC--TGTCCTAACAGC 2988827 Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACAT 39612 | | ||||| | ||||| || || ||| || | | | || ||||| Sbjct 2988826 ATTAATAATTATTTCTTTTACTCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACAT 2988767 Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 || ||||| |||||||| ||| ||||||||||| |||| | ||| || |||||||| Sbjct 2988766 TAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATGT 2988707 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 ||| |||||||| | || || ||||| || ||||| | |||||||| ||| ||| Sbjct 2988706 GAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAAA 2988647 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT-TAT 39791 ||||||| ||||| ||||||| || |||| ||||| || | ||| | | | | Sbjct 2988646 GAAGATG-TTTCTA---CTGCAAAAGCTACAACATGCTCTC--TA--TAGTAGCTTCTTT 2988595 Query 39792 GTATCCACTTC--TGT---GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 || ||| | | ||| |||||||| || |||||||||||||||| || |||| || Sbjct 2988594 GTCCCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAAT 2988535 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 || | |||||| | | |||| | | ||||||| | || || | | ||||| Sbjct 2988534 GGCCCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACT 2988475 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 ||||||||| ||| |||||||| | || || ||||| | || || || | ||||| Sbjct 2988474 ATACATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTC 2988415 Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 ||||| || || ||| | || | ||| ||| ||||| ||| || |||||||| Sbjct 2988414 TGTAATCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACT 2988356 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 | ||||| || | || |||||| ||||||||||| | || || | Sbjct 2988355 TGTTGCAAAGAA-GTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAGGAGGGCTCC 2988297 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||||| | || ||||| || | ||| || || |||||||| ||||| || ||||| || Sbjct 2988296 CCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGC 2988237 Query 40147 CTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAA-ATAACAAA 40197 || || ||||| | ||| |||||| | |||| ||| ||||| || ||||| Sbjct 2988236 TTTCTTATACATTTGCCAAATATCATGGTATT-AATTAGAAAAGATGACAAA 2988186 >seq10 Length=25572408 Score = 165 bits (182), Expect = 1e-35 Identities = 294/423 (70%), Gaps = 17/423 (4%) Strand=Plus/Plus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 ||| | ||||||||| | || || ||||| |||| || |||||||| ||||| |||| Sbjct 5064964 TGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACC-TCATCTCTGCTAATAAATTAA 5065022 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || ||||||||||| |||||||| | || | || |||||| | ||||| | |||| Sbjct 5065023 TTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAA 5065082 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA---TGCAACAAGTCTCTCTCCGTAA 39778 || |||||||||||||| | ||||| | || |||| ||||||| | |||||| | Sbjct 5065083 GAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACATG---CTCTCC---A 5065136 Query 39779 CTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 |||| | ||| | | ||| || || ||||||||||| |||||| | Sbjct 5065137 TTTGTCCC-----CAATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTACCCAAGGCGTC 5065191 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 ||| ||| |||| || || | | |||| | |||||||| || || || || Sbjct 5065192 ATTTTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAATA 5065251 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | |||||||||||||| |||||||||||||| || || || || || | | |||| Sbjct 5065252 AGGAGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTG-GATGCTAGAGAACA- 5065309 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 || || ||||| || | ||| |||| | | ||||||||||||||||||| Sbjct 5065310 GAGGCATCTGTAATCTGAATTTCTTGGTTAAATTGCTACACCAAATTTTCATTCACTATG 5065369 Query 40019 CCA 40021 ||| Sbjct 5065370 CCA 5065372 >seq25 Length=20042899 Score = 147 bits (162), Expect = 3e-30 Identities = 114/136 (84%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||||| || || || | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||||||||||||||| | Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| | |||||| Sbjct 6229172 CTACAACACGCTCTCC 6229187 >seq21 Length=21368495 Score = 134 bits (148), Expect = 2e-26 Identities = 103/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | ||| || Sbjct 10317095 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 10317036 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||||||||||||||||||||| ||||| || |||||||| || ||||| ||| Sbjct 10317035 AGCCAGAATATGGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGGCA 10316976 Query 39761 AC 39762 || Sbjct 10316975 AC 10316974 >seq74 Length=12003515 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || || |||||||| ||||| | || Sbjct 11048361 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 11048302 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| || ||||||||||| ||||| ||||| || |||| | |||||| Sbjct 11048301 TCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAACTG 11048242 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 11048241 TTTCTTACACCAT 11048229 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| |||||||| || || | | | ||||||||||||||| || || | Sbjct 11042978 GAGCCCTCATAGGTTTCATACGGGCCATGGTCCTTAGCTAGTTCACAACTGGCTTCCAGG 11042919 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| ||||||| |||||| | ||| || ||| |||| || Sbjct 11042918 GCTCCATAATAAATGGTTTCAAAAATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCA 11042859 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || ||||| | || ||||| |||||||| | || ||||||||||| || || ||| Sbjct 11042858 AAAGGATACCTCATCAGGATAAAAGCATCTGCTAGACCTTGAACCCCAATTCCAATTGGT 11042799 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 11042798 CGATGGCGTTTATTTGA 11042782 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 11011728 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 11011669 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| |||| ||||| || || | Sbjct 11011668 GGATGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTGT 11011609 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| ||||| || | |||| ||||| || |||||||||| Sbjct 11011608 CTAGTTCCACAGTGGTAACCCCACTGTATAAGCCTTGGATTACTTTCATGG 11011558 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || |||||||||||||| || |||||| || | || || || || || || | Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || ||||||||||||||||||||||| || || ||||| || | | | | Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 |||||| |||||||| | |||||| ||| || || | ||||| |||| Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 11050847 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || ||||| ||||| || ||||| || || ||| Sbjct 11027254 GTACCAGCATTGAAAAGAGTGGGAGAGGCATGAGTAAACCACTTCTCAGAGAGAAGGTTG 11027195 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || || || | |||||| || | | || | ||||||| Sbjct 11027194 TATGTTTCAATAGCAGCATCAATGTCTTCTTCATGAATCCCAACAGATACCCTCATCAAC 11027135 Query 70111 ATATGCTGAGGTCGTTC 70127 ||||| || |||| ||| Sbjct 11027134 ATATGTTGTGGTCTTTC 11027118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567 |||||| || ||||| ||||||||||| ||||||| ||||| ||||||||||||||| Sbjct 11037519 TATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGGCATTCATTTGGACAC 11037460 Query 69568 ATCAATGACCA 69578 ||||| ||||| Sbjct 11037459 ATCAAAGACCA 11037449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686715529622760