Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq347 145 6e-30 seq25 113 4e-20 seq21 104 2e-17 seq18 98.7 8e-16 seq10 84.2 2e-11 >seq347 Length=3625835 Score = 145 bits (160), Expect = 6e-30 Identities = 578/894 (65%), Gaps = 28/894 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||| | | | |||| ||||| || ||||||||||| || ||||| |||| Sbjct 2988186 TTTGTCATCTTTTCTAATTAATACCATGATATTTGGCAAATGTATAAGAAAGCTGAGGCT 2988245 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGATTGCAT 43817 || ||||| ||||| || || || ||| | | |||||| | ||||| ||| || Sbjct 2988246 TCCTTTTGTACAGCTGAGGAGGTGGATCTTTCCAAAGACATTCAGCAC--TGGGGAGCCC 2988303 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || | | ||| |||||||||| ||| || | || ||||| | || || | Sbjct 2988304 TCCTGCCTGAGAAGAAATATTTTATATCACATGTTCTGAC-TTCTTTGCAACAAGTGATG 2988362 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | || | | ||||| ||| | | || || ||||||||||| |||| ||||||| Sbjct 2988363 GCATGCTGACAGAAAACTTGATGGAGCACTTAGC-CAAGAAGTTCAGATTA-CAGAAGCC 2988420 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 | || || |||| |||||||||||| | ||||| || ||| |||||||| ||||| Sbjct 2988421 TGCTGCTTCTATGACTTTCAAATTGCCTTGGAAAACATATGTTCTGAAATGTATAGTCTC 2988480 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || | || || ||| |||||| | || | | | | || | || || ||| Sbjct 2988481 CTTACTGACACTGACACTAAAGATTCTAAGGAAAGGGAATTTCTCTTCAGGGCCATTGAA 2988540 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGAT 44116 | | ||| | || | | || ||| |||||| | | ||||| || || Sbjct 2988541 ATGATTCCTTGTGTAAAGAAGAGAGAAGATTGGGCCTTACATTGGATTGGGGACAAAGAA 2988600 Query 44117 TCT--TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 || | | |||| | |||| || |||||||| | | ||| |||||| || | Sbjct 2988601 GCTACTATAGAGAGCATGTTGTAGCTTTTGCAGTAG----AAACATCTTCTTTCTTGGTT 2988656 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | ||||| | ||||| || | |||||| ||| ||||||||||| | || ||||| | Sbjct 2988657 CTTTTGCATCGATATTCTGCCTCAAGAAATAAGGATTGATGCCTGGCCTCACATTTTCCA 2988716 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGAT 44294 |||| | || | | ||||| || | ||| || || ||| | ||| | | | | Sbjct 2988717 ATGAACTTATTAACAGAGATGAGGGTTCACACTGTGACTTTACCTGCCTAATGTTCAACT 2988776 Query 44295 ATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAA 44354 | || | || | || |||||| ||| | | | ||| || || | | || || | Sbjct 2988777 ACCT--GCTAC-ACAAACCTTCAGAGCAGAGAGTAAAAGAAATAATTATTAATGCTGTTA 2988833 Query 44355 AGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT-GAA 44413 || |||| | || || | || | || || || | || | || |||||||| | | Sbjct 2988834 GGACAGAATAGGAGTTCCT-ACTAAGGCCTTGTCTATGAAGCTTATCAGAATGAATCGCA 2988892 Query 44414 CTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGC 44473 | ||| ||||| || ||||||| | | ||||| | ||| || ||||||||| Sbjct 2988893 C-TTTAATGAAGAGGTACATTGAATTCGTGGCAGACAGATTAAGGCTGAAACTGGGTT-- 2988949 Query 44474 GATAAACACTAT----ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGA 44529 | |||| | | ||| || | || ||||| |||| || |||||||| ||||| Sbjct 2988950 --TTAACAAGGTGCTCAAGGTAGAAGATCCATTTGACTTTACAGAGAATATTTCATTGGA 2989007 Query 44530 AGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583 ||| || || |||| ||||| || | || | || |||| || ||||| || Sbjct 2989008 AGGGAAGACTAACTACTTTGAGAAGAGAGTAGATGAGTATCGGCAGATGGGAGT 2989061 >seq25 Length=20042899 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || || || ||||| || ||||||||||| ||||| Sbjct 6231376 CAAGAAGTTCAGATTAC-AGAAGCTCGCTGCTTCTATGGCTTCCAAATTGCCATGGAAAA 6231318 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || |||||||| |||||| Sbjct 6231317 CATACATTCTGAAATGTATAGTCTTCTTATTGACACGTACATTAAAGAT 6231269 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || |||| || ||||||| || ||||| || |||||||| || || ||||| Sbjct 6229187 GGAGAGCGTGTTGTAGCCTTTGCAGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 6229128 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| || |||||||| | || ||||| ||||| | Sbjct 6229127 TCAATATTCTGGCTCAAGAAACGAGGATTAATGCCTGGCCTCACATTTTCCAATGAACTT 6229068 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 6229067 ATTAGCAGAGATGA 6229054 >seq21 Length=21368495 Score = 104 bits (114), Expect = 2e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| |||||||| |||||||| || ||||||| Sbjct 10335107 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTGGAAGGGAAAACAAATTTCTTTGAAA 10335166 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| |||||||||||| Sbjct 10335167 AACGAGTTTCAGAATATCAGCG 10335188 >seq18 Length=22291249 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/163 (74%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 21933616 AACAGTGGTTTGCACATCATCATCTTTGATGAAATCGATGCCATCTGCAAGCAGAGAGGG 21933675 Query 19600 T-------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652 | || | | | ||||| |||||||||||||||||||| || ||||| ||| | Sbjct 21933676 AGCATGGCCGGGAGCACA-GGAGTGCATGACACTGTTGTCAATCAGCTGCTGTCCAAAAT 21933734 Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | ||||||||||| ||| |||| ||||| ||| Sbjct 21933735 TGATGGAGTGGAGCAACTGAATAACATTCTAGTCATTGGTATG 21933777 >seq10 Length=25572408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 43877 GGGATAGTCAATGAAAATTTGGT-TAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAG 43934 || ||||| |||||||||||||| ||| | ||| |||||| |||| |||| |||| | Sbjct 5065371 GGCATAGTGAATGAAAATTTGGTGTAG-CAATTTAACCAAGAAATTCAGATTA-CAGATG 5065314 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | | || || | | | | |||||||| || ||||| || ||||| |||||||| |||| Sbjct 5065313 C-CTCTG-TTCTCTAGCATCCAAATTGCTATGGAAAACATCCATTCTGAAATGTATAGTC 5065256 Query 43995 TTCTGATAGATACGTACATCAAAGAT 44020 | || || || || ||||| |||||| Sbjct 5065255 TCCTTATTGACACTTACATTAAAGAT 5065230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397346966516545