Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq368 152 6e-32 seq101 141 1e-28 seq113 113 5e-20 seq48 111 2e-19 seq141 109 6e-19 >seq368 Length=3467158 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | | |||||||| || ||||||||||| ||| | || Sbjct 925145 ATGCAGATCTTTGTGAAGACCTTGAAGGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 925204 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || ||||| || | ||||||||| |||||||| |||||| Sbjct 925205 GACACCATGGAGAATGTCAAAGCCAAAATCCAAGCCAAGGAGGGCATTCCTCCTGACCAG 925264 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||| || || | || ||||||| |||| || |||| || || Sbjct 925265 CAGCGTCTGATTTTTGAGGGCAAAGAGCTAGAGGATGGCCGTATTCTCTCAGATTACAAC 925324 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | ||| | | ||| |||||||| Sbjct 925325 ATCCAGAAAGAGTCCACCCTGCACCCAGTGCTACATCTCCGCGGTGG 925371 >seq101 Length=10068975 Score = 141 bits (156), Expect = 1e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || || ||||| || || || | || ||||| || ||||| |||||||| | Sbjct 9126537 ATACAGATTTTTGTAAAAACCCTAATGGGAAAGACCATAACTCTCGAGGTTGAACCCTCA 9126596 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 9126597 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 9126656 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| |||||||| || |||| |||||| | | ||||| || Sbjct 9126657 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAAC 9126716 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | |||||||||| ||||||| |||| Sbjct 9126717 ATTCAAAAGGAATACACTCTTTATCT 9126742 >seq113 Length=9792114 Score = 113 bits (124), Expect = 5e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | |||||||| ||||| || || |||||||| || ||||| ||||||| | || Sbjct 4493642 ATGTAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTCAAGGTTGATCCCAGT 4493583 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| ||| | || || ||||| || ||||||||||| || || || |||||| Sbjct 4493582 GACACCATCAAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 4493523 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||||| || ||||||| || | ||||| ||||||| Sbjct 4493522 CAGCGACTGATTTTTGTGGGCACACAACTGGAGGATG 4493486 >seq48 Length=15315231 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||||| ||||| ||||||||||| || ||| | | Sbjct 866224 AATGCAAATCTTCGTGAAGACCCTGACCGGTAAGACCATTACTCTTGAAGTAGAGCCCAG 866283 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || || |||||||| || || ||||| ||||| Sbjct 866284 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 866343 Query 27525 GCAG 27528 |||| Sbjct 866344 GCAG 866347 >seq141 Length=8596878 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 ||||| || || || | | ||||| ||||||||||||||||| | | | || | Sbjct 2166279 TTTGTAAAAACCCTGATGGAGAAGACCATTACTCTTGAGGTTGAATTCTGAGCTACAGTA 2166220 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | |||| | ||||| || ||||| || |||| ||||||| ||||| | ||| Sbjct 2166219 GAAAATGTAAAGGCCAAGATTCATGATGAGGAAGGAATTC---------AGCAGAGACTA 2166169 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 | |||||||| |||||||| | ||||| ||||| | | | ||| ||| | |||||| Sbjct 2166168 -TCTTTGCTGGCAAGCAACTACAAGATGAATGTACCTTGTCTGGCTACAATATTCAAAAG 2166110 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| | || ||||| |||| ||||| Sbjct 2166109 GAATCTTCTCTTCATTTTGTGTTGCGACTTCAGGGTGG 2166072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570149936040080