Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq5 136 5e-27 >seq5 Length=32993971 Score = 136 bits (150), Expect = 5e-27 Identities = 258/373 (69%), Gaps = 14/373 (4%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||| ||| ||||||| |||||||| |||| || || || ||| | |||||||| Sbjct 9424265 CCCCTTAGCAAAGAAGAGGCAGAGTTTCCGCTCGCATATTCTATAGTGGTTCACCACAAA 9424324 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || || ||| |||| | |||||||||||||||||| || ||||| |||| ||| | Sbjct 9424325 ATTGAAATGCTCGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 9424384 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTC---ATCCGGGGC-GTCTCGGCCATCGCCAG 13846 || |||||| ||||||| | ||||| | || || || || ||| || Sbjct 9424385 CATGTGGACAAAAAGTCCGAC----AGTTCCTTTTTAGGTGCTGTAATGGGCATTGCATC 9424440 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAG 13906 || ||| |||||| | ||| ||||||| | | |||||||| | || ||||| Sbjct 9424441 CTGTTTCAGTAACGTCTTTGTAGCCAGCCGGCTGGAGAATGTGGTGTATGCTTCATGGAG 9424500 Query 13907 TCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGT-CA-AGTG 13963 ||||| ||||| ||||||| |||||| |||||| || | | || || | || Sbjct 9424501 CCGCGTCCAGGCAGACCTCAATTGCATGAAGGACCTCTACAGAAT---GAGTGCAGACTG 9424557 Query 13964 GAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 || |||| || | || || || || ||||| || || | || ||||||||||| ||||| Sbjct 9424558 GAAGTACTTGATAAATCTTTGTGGCATGGATTTTCCTATTAAAACCAACCTGGAAATCGT 9424617 Query 14024 GCGGGCGCTGAAG 14036 || ||| ||| Sbjct 9424618 CAGGAAGCTCAAG 9424630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658553855491840