Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq30 132 4e-26 seq107 96.9 3e-15 seq168 95.1 1e-14 >seq30 Length=19208098 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 15109594 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 15109535 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| || ||||| || || ||||||||||| ||||| || || ||||| |||| | Sbjct 15109534 ACCCCCAGGCCCATATCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 15109475 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 || || ||||| || | ||| ||||| ||||| || ||||| Sbjct 15109474 ACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCAT 15109434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 || ||||| || |||||||||||||| || || || || || || | ||||| |||| Sbjct 15106148 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTACTTCT 15106089 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 | | ||| ||| ||||||||||||||| ||| || ||||| ||||||||||| Sbjct 15106088 CGGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCATTGGCATCCCAGATCTTC 15106029 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 || ||||| ||| | ||||| | || ||||| || Sbjct 15106028 ACTCCCTTGGAAGACAATTCTTTAGCATTGGTGGATCC 15105991 >seq107 Length=10112982 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || || ||| ||| |||||||| ||| | ||| Sbjct 6826560 TTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATGCTTCTTGGGA 6826619 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| |||||||| ||||| || ||| Sbjct 6826620 ATGGAGAACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTACCT 6826667 >seq168 Length=7504001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/245 (72%), Gaps = 20/245 (8%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| |||| || || || || || ||||| |||| || || || ||| | Sbjct 3980905 ATGAGCTCCTTGTAGGGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTT 3980964 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCA-AGTCTTTCTACCCATTATCACCACGT 110497 || |||||||| ||| | || ||||||||||| ||||| |||||||| |||||||| | Sbjct 3980965 CAAAGGTCTATGCTTCTTGGAAATGGAGAACCAGGGTCTTCCTACCCATAATCACCACAT 3981024 Query 110498 TCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTT-AAAAT-CTT 110554 |||| || || ||| || ||||| | | |||| || || | | ||| ||||| ||| Sbjct 3981025 TCTGTTTACCATCT-ACGGAAGAAGATGTGGTCGTGG-TC---ATTCTTTGAAAATACTT 3981079 Query 110555 TGCAAAGTC--TC----GCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG- 110607 | || || || ||||| |||| | || ||||| || || | |||||||||| Sbjct 3981080 T---AATTCATTCCTGAGCAGG-GGCCAGGATAGGTCTCCATTCTTGCTGATGCCCATGT 3981135 Query 110608 TCTGG 110612 ||||| Sbjct 3981136 TCTGG 3981140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406198937502828