Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq48 102 7e-17 seq139 95.1 1e-14 seq368 87.8 2e-12 seq101 87.8 2e-12 >seq48 Length=15315231 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| || || || || ||||||| ||| | || || |||||||| || || ||| Sbjct 865772 CAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGTGAC 865831 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | ||||||| ||||| ||| || ||||||||||||||||| || || || || ||| Sbjct 865832 ACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAGCAG 865891 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 | || || | || || ||||| ||||||| | ||| | || || |||||||| Sbjct 865892 AGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCGGACTACAACATC 865951 Query 27171 CAAAAGGAGTCGAC 27184 || || ||||| || Sbjct 865952 CAGAAAGAGTCCAC 865965 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||| ||| | |||||||||||||| || || Sbjct 866225 ATGCAAATCTTCGTGAAGACCCTGACCGGTAAGACCATTACTCTTGAAGTAGAGCCCAGT 866284 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||| || |||||||| |||||||| || || || || Sbjct 866285 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 866344 Query 27108 CAGCGTTTAAT 27118 ||| | || || Sbjct 866345 CAGAGGTTGAT 866355 >seq139 Length=8626845 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || || || |||||| | || || || || ||||| || Sbjct 1930806 ATGCAGATCTTCGTAAAGACCCTAACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1930865 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || ||||| ||||||||||| || || || || Sbjct 1930866 GATACCATCGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGCATTCCCCCTGACCAG 1930925 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || |||||||| | || |||| || ||||| Sbjct 1930926 CAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCGCACTCTTTCTGACTACAAT 1930985 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || | || | ||| || ||||||| || Sbjct 1930986 ATCCAGAAAGAGTCGACCCTGCACCTTGTCCTTCGTCTGAGGGGTGGTAT 1931035 >seq368 Length=3467158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||| |||||| | || |||||||| ||||| || Sbjct 925145 ATGCAGATCTTTGTGAAGACCTTGAAGGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 925204 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| |||| ||| || ||||| || || || || Sbjct 925205 GACACCATGGAGAATGTCAAAGCCAAAATCCAAGCCAAGGAGGGCATTCCTCCTGACCAG 925264 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | | |||||| | | || || | | | || ||||||||| Sbjct 925265 CAGCGTCTGATTTTTGAGGGCAAAGAGCTAGAGGATGGCCGTATTCTCTCAGATTACAAC 925324 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || || ||||| ||| Sbjct 925325 ATCCAGAAAGAGTCCACC 925342 >seq101 Length=10068975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 || ||||| ||||||||||| || | || ||| | || ||||| || || ||||| || Sbjct 9126537 ATACAGATTTTTGTAAAAACCCTAATGGGAAAGACCATAACTCTCGAGGTTGAACCCTCA 9126596 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || || || ||||| || || || ||||| Sbjct 9126597 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 9126656 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| ||||||| | ||| | || || |||||| Sbjct 9126657 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAAC 9126716 Query 27168 ATTCAAAAGGA 27178 ||||||||||| Sbjct 9126717 ATTCAAAAGGA 9126727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434796030271680