Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq30 141 8e-29 >seq30 Length=19208098 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || |||| |||||| || || || ||||| |||| ||||| ||||| || | ||| Sbjct 15109422 GACCTTCCTCAGATGGCACTGCCTCCCTGCCATGCCCTTTGCCAGTTCTATGTGGTGAAC 15109481 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || ||||| ||||| | |||||||| ||| Sbjct 15109482 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGATATGGGCCTGGGGGTGCCTTTC 15109541 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 15109542 AACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 15109582 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| |||||||| | ||| Sbjct 15109582 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACCCCCAGGCCC 15109523 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || || ||||||||||||||||| || ||| | || ||||| ||| Sbjct 15109522 ATATCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGG 15109463 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| ||||| || || || |||||| |||| || || Sbjct 15109462 CAAAGGGCATGGCAGGGAGGCAGTGCCATCTGAGGAAGGTC 15109422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34313 TCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGG 34372 || ||| ||| |||||||||||||| || | ||||| ||||||||| |||||| | | Sbjct 15106015 TCTTCCAAGGGAGTGAAGATCTGGGATGCCAATGGGTCCCGAGACTTTTTGGACAGCCTG 15106074 Query 34373 GGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACAC 34432 || ||| | | || || | || || || ||||| || || || || |||||||| || Sbjct 15106075 GGATTCTCCACCCGAGAAGTAGGAGATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCAT 15106134 Query 34433 TTTGGGGCGGAGTAT 34447 |||||||| || ||| Sbjct 15106135 TTTGGGGCAGAATAT 15106149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||| || |||||||| || |||||||| || || || || ||||| || || || | || Sbjct 15106149 ATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTACTTC 15106090 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | | ||| ||| | |||||| ||||||||| ||||| | || ||||||||||| Sbjct 15106089 TCGGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCATTGGCATCCCAGATCTT 15106030 Query 7018 CACCCCCCGGGACGA 7032 ||| ||| ||| || Sbjct 15106029 CACTCCCTTGGAAGA 15106015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448136275770480