Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq168 235 5e-57 seq184 150 1e-31 seq29 104 2e-17 seq4782 89.7 4e-13 seq107 82.4 6e-11 >seq168 Length=7504001 Score = 235 bits (260), Expect = 5e-57 Identities = 396/565 (70%), Gaps = 20/565 (4%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 ||||||||||| |||| | | || |||||||| | || || ||| | || | Sbjct 3981163 CTAAACTGTATCATCACTGTGCCCCAGAACATGGGCATCAGCAAGAATGGAGACCTATCC 3981104 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---------ATCTTCT 2250 ||||| | || | |||||||| || ||||||||| |||||| ||||||| Sbjct 3981103 TGGCCCCTGCTCAGGAATGAATTAAAGTATTTTCAAAGAATGACCACGACCACATCTTCT 3981044 Query 2251 TCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACA-TGGTTTTCACTTCC 2309 ||| || ||||||||||| || |||||||| || ||||| ||||| || || | Sbjct 3981043 TCCGTAGATGGTAAACAGAATGTGGTGATTATGGGTAGGAAGACCCTGGTTCTCCATTTC 3980984 Query 2310 CATTAAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAA 2367 || | ||||| | |||||||| | ||||| ||| | |||||||||||| | || || Sbjct 3980983 CA--AGAAGCATAGACCTTTGAAAGATAGAATTAATTTAGTTCTCAGTAGAGAACTCAAG 3980926 Query 2368 GAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATA 2427 || || | || || ||||| ||| | || |||||| | ||| | || | || |||| Sbjct 3980925 GAACCCCTACAAGGAGCTCATTTTCTCGCCAAAAGTCTGGATGATGCCTTAAAACTTATT 3980866 Query 2428 ATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTC 2487 ||||||| || | | | ||||| | | ||||||||||||| || || |||||| Sbjct 3980865 GAGCAACCAGAAATAGGAAATAAAGTGGAAATGGTTTGGATAATTGGAGGCAGTTCTGTC 3980806 Query 2488 TATGAGGAGAGCATT--ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGC 2545 || |||| ||| | || || | || | | | |||||| | |||||||| ||| Sbjct 3980805 TACAAGGA-AGCTATGGACCAGC-CAGGCCATCTTAGACTGTTTGTGACAAGGATCATGC 3980748 Query 2546 AAAAATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACC-AAATACAAACAACTT 2604 | ||||| || |||| | || ||||| |||||| || |||| ||||| |||| || Sbjct 3980747 AGGAATTTAAAAGTGACATATTTTTCCCTGAAATTGAT-TTACAGAAATATAAACTTCTC 3980689 Query 2605 ACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTT 2664 | |||| ||||||||||| |||| || || ||||| ||||| |||| ||||||||| Sbjct 3980688 CCAGAATACCCAGGTGTTCCTTCTGATGTCCAGGAAGAGAATGGTATTAAGTACAAATTT 3980629 Query 2665 GAGATATATGaaaaaaaaaCATAAT 2689 || |||||||||| || ||||| Sbjct 3980628 GAAGTATATGAAAAGAATGAATAAT 3980604 >seq184 Length=6952770 Score = 150 bits (166), Expect = 1e-31 Identities = 182/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 1278 CAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCC 1337 || ||||| | || || |||||||| ||| | || || ||| ||||||||| |||| | Sbjct 4689244 CAGGAAGTCTTGATAGTGACATGGCAGAAAATAAAGGCTACAAACCCAGAAAATATGGTC 4689303 Query 1338 ACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATA 1397 || || || || | | |||||||| |||||||| | || || || | | ||||| Sbjct 4689304 ACATTCAGCAAGAAAAATGGGGTTGTGGTTCAGCCTGGCTATAAGGACAGGGTAAACATC 4689363 Query 1398 ACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAA 1457 || | || ||||| | || | ||||||||||||||||| || || |||| ||||| Sbjct 4689364 ACGTATCTCGGACTCAATGACTCCACTATAACCTTCTGGAATACTACCCTGGAGGATGAG 4689423 Query 1458 GGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGT 1517 ||||| |||| ||| | || || || ||||| ||||||||||| ||||||| || || Sbjct 4689424 GGGTGTTACATGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAAAAGCCTGC 4689483 Query 1518 CTAACCCT 1525 || ||||| Sbjct 4689484 CTCACCCT 4689491 >seq29 Length=19260028 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||| | ||||| || ||||||||| Sbjct 5229012 GTGGTGGAGGAGCTCTTCAGGGACGGGGTCAACTGGGGAAGGATTGTGGCCTTCTTTGAG 5229071 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || |||||||| || |||||||| | | || | |||| || |||||| Sbjct 5229072 TTCGGTGGGGTCATGTGTGTAGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 5229131 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| |||||||| || Sbjct 5229132 ATCGCCCTCTGGATGACTGA 5229151 >seq4782 Length=8655 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/239 (68%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| ||| |||| || | || |||||||| |||| || ||| | || || Sbjct 5020 CTAAACTGCCTTGTCACTGTGTCCCAGAAGATGGGCATCAGAAAGAATGGAGATCTACCT 5079 Query 2200 -TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---------ATCTTC 2249 ||||| || || |||||||| || ||||||||| |||||| | |||| Sbjct 5080 CTGGCCCCCGCTCTGGAATGAATTCAAGTATTTTCAAAGAATGACTGCAACCATAACTTC 5139 Query 2250 TTCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCC 2309 ||| || | || ||||| | || |||||||| || | ||| | |||||| ||||| Sbjct 5140 TTCATTAGAAATTGAAAAGAATTTGGTGATTATGGGTAGGATGACCTAGTTTTCCCTTCC 5199 Query 2310 CATTAAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAG 2368 || | || |||||| | ||||| ||| | |||||||||||| | || |||| Sbjct 5200 TGAGAAGAATAGATGTTTGAAAGATAGAATTAATTTAGTTCTCAGTAGAGAACTCAAAG 5258 >seq107 Length=10112982 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||||| || |||||||| || ||||| ||||| || |||||| | ||||| Sbjct 6826663 AAACAGAATGTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCCA--AGAAGCATA 6826606 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAA 2366 | |||||||| | ||||| ||| | |||||||||||| | || || Sbjct 6826605 GACCTTTGAAAGATAGAATTAATTTAGTTCTCAGTAGAGAACTCAA 6826560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414363097227076