Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq48 95.1 9e-15 >seq48 Length=15315231 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| ||||| || || ||||| || ||||| |||| || || || Sbjct 865996 AATGCAGATTTTCGTGAAGACCCTGACTGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 866055 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| ||| || ||||| |||||| | || || Sbjct 866056 TGACACCATTGAGAAT--GTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCTGAC 866113 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || |||||||| ||||| |||| || | |||| | |||| || ||| Sbjct 866114 CAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 866173 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||||| |||| |||| ||||| | ||| || | || || Sbjct 866174 AACATCCAGAAAGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 866223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355764776823843