Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq48 113 3e-20 seq101 98.7 7e-16 seq113 84.2 1e-11 >seq48 Length=15315231 Score = 113 bits (124), Expect = 3e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||| || || || || || || || ||||| || ||| Sbjct 865996 AATGCAGATTTTCGTGAAGACCCTGACTGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 866055 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | ||| || ||||| |||||| | || || || | Sbjct 866056 TGACACCATTGAGAATGTCAAGGC-AAAGATCCAAGACAAGGAAGGTATCCCTCCTGACC 866114 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| ||||| |||||||| | ||||| | || |||| Sbjct 866115 AGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACA 866174 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 866175 ACATCCAGAAAGAGTCCAC 866193 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 ||||| ||||| || ||| | || || || || ||||| || ||||| || ||| ||| Sbjct 865772 CAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGTGAC 865831 Query 23674 ACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 || |||| ||| | || |||| | | ||||||||||| | || || || || || Sbjct 865832 ACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCTCCTGACCAGCA 865890 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 | | || || ||||| || ||||| |||||||| | ||||| | || |||||||| Sbjct 865891 GAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCGGACTACAACAT 865950 Query 23793 ACAAAAAGAGTCCAC 23807 || ||||||||||| Sbjct 865951 CCAGAAAGAGTCCAC 865965 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || || || ||||| || ||||| || | | Sbjct 866785 AATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCTAG 866844 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | | || || ||||| | || || || | Sbjct 866845 TGACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGATAAGGAAGGCATCCCTCCTGACC 866903 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || ||||| |||||||| | ||| || | || |||| Sbjct 866904 AGCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGTACCCTGTCTGACTACA 866963 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 866964 ACATCCAGAAAGAGTCCAC 866982 >seq101 Length=10068975 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 || |||||||| || |||||||| | |||||| || || |||||||| ||||| || | Sbjct 9126537 ATACAGATTTTTGTAAAAACCCTAATGGGAAAGACCATAACTCTCGAGGTTGAACCCTCA 9126596 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| |||| || || || || ||||| | || || ||||| Sbjct 9126597 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 9126656 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| ||||||||||| | ||| || || || |||||| Sbjct 9126657 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAAC 9126716 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || | ||| Sbjct 9126717 ATTCAAAAGGAATACAC 9126733 >seq113 Length=9792114 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| |||| || || || ||||| ||||| || || ||||||||| | ||||| ||| Sbjct 4493642 ATGTAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTCAAGGTTGATCCCAGT 4493583 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | ||| | ||| | |||| | ||||| || || | || || || || Sbjct 4493582 GACACCATCAAGAATGTCAAAGCCAAAA-TCCAAGACAAGGAGGGCATCCCCCCTGACCA 4493524 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || |||| |||| ||||||||| || | | ||| | ||| |||| Sbjct 4493523 GCAGCGACTGATTTTTGTGGGCACACAACTGGAGGATGGCCACACACTCTCAGATGACAA 4493464 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||| ||||||||||| Sbjct 4493463 CACACAGAAAGAGTCCAC 4493446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337916874354572