Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq139 140 8e-28 seq171 138 3e-27 seq48 132 1e-25 seq22509 111 4e-19 seq662 109 1e-18 seq138 100 7e-16 seq113 96.9 8e-15 seq163 91.5 4e-13 seq107 91.5 4e-13 seq382 87.8 4e-12 seq6 84.2 5e-11 >seq139 Length=8626845 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || || ||||| |||| |||||| || | | ||| | |||||| Sbjct 1931245 AGGACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1931186 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | |||||||| || ||||||||||| || || Sbjct 1931185 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCC 1931126 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||||| || || ||||| || | ||||| ||| Sbjct 1931125 TGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1931066 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 1931065 TTGCCAGTCA 1931056 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || || ||||| |||| |||||| || | | ||| | |||||| Sbjct 1931017 AGGACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1930958 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || || ||||| || | || ||||| || ||||| ||||| || ||| Sbjct 1930957 TCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCT 1930898 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||||| || || ||||| || | ||||| ||| Sbjct 1930897 TGGATCTTAGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1930838 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | || |||| ||| | ||||| || Sbjct 1930837 TTGCCTGTTAGGGTCTTTACGAAGATCTGCATCTT 1930803 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || || ||||| |||| ||||| || | | ||| | |||||| Sbjct 1931473 AGAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCT 1931414 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | |||||||| || ||||||||||| || || Sbjct 1931413 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCC 1931354 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||||| || || ||||| || | ||||| ||| Sbjct 1931353 TGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1931294 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 1931293 TTGCCAGTCA 1931284 >seq171 Length=7382970 Score = 138 bits (152), Expect = 3e-27 Identities = 135/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || ||| || | | ||| ||||| || || || ||||||||| | ||||| Sbjct 4139273 CCAAATTTATAATGTTGTTGTAATGGCTCATGCTTTCGTAATAATTTTCTTTATAGTTAT 4139332 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || ||||| || |||||||| || || |||| ||||| || ||||| Sbjct 4139333 ACCTATTATAATTGGTGGTTTTGGTAATTGATTAGTACCCCTAATAATTGGAGCACCTGA 4139392 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || ||||| || | ||||||||||| ||||||||| |||| |||||||| Sbjct 4139393 CATAGCATTTCCCCGGATAAACAATATAAGCTTTTGATTATTACCTCCTTCCTT 4139446 >seq48 Length=15315231 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| ||||| |||| ||||| || | || || | ||||||| Sbjct 865980 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCT 865921 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| | | || ||||| || || || ||||| |||||| Sbjct 865920 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 865861 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| || |||||||| || || || || | ||||| ||| Sbjct 865860 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTC 865801 Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704 || || ||||| || || | ||| Sbjct 865800 TTACCGGTCAAGGTCTTCACGAA 865778 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| ||||| |||| ||||| || | || || | ||||||| Sbjct 866208 AGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 866149 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| | | || ||||| || || ||||||||||||||| Sbjct 866148 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCT 866089 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| || |||||||| || || || || | || || ||| Sbjct 866088 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTC 866029 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||| || || | ||| | |||||| Sbjct 866028 TTACCAGTCAGGGTCTTCACGAAAATCTGCATT 865996 Score = 125 bits (138), Expect = 2e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| |||||||| ||||| |||| ||||| || | || || | ||||| Sbjct 866998 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 866939 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| |||||||| ||||| | | || ||||| || || || |||||||| || Sbjct 866938 TTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATC 866879 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||||| ||| ||| || |||||||| | || || || | ||||| || Sbjct 866878 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGT 866819 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || |||| || || | ||| | |||||| Sbjct 866818 CTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 866785 >seq22509 Length=16816 Score = 111 bits (122), Expect = 4e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | || |||||| || | || || ||||| || || || ||||||||| | || || Sbjct 5484 CCAAATCTATAACGTTGTTGTAACAGCTCATGCATTCGTAATAATTTTCTTTATAGTGAT 5543 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| |||| || || ||||| ||||| ||||| || || |||| ||||| || ||||| Sbjct 5544 GCCTATTATAATTGGAGGTTTTGGAAACTGATTAGTACCCCTAATAATTGGAGCACCTGA 5603 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || || || | | ||||||||||| || ||| || | || ||||| || Sbjct 5604 CATAGCATTCCCTCGAATAAACAATATAAGCTTCTGACTATTGCCCCCTTCATT 5657 >seq662 Length=1284721 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||||||| | ||| || ||||| ||||| |||| | ||| || | || || | ||| Sbjct 539889 CTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCA 539948 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||| ||||| |||||||| ||||| | | || ||||| || || || |||||||| Sbjct 539949 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 540008 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||||||| ||| ||| || |||||||| Sbjct 540009 TCTTGGATCTTTGCCTTGACATTCTCAATGGTGTC 540043 >seq138 Length=8760405 Score = 100 bits (110), Expect = 7e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 371383 GATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGA 371442 |||||| | || | | ||||||| || ||| |||||||||| || || ||||||| | Sbjct 8637469 GATAAAGCTGGGGGTTTTATATTAATAATAGTAATAATAAAGTTAATTGCCCCTAGAATA 8637410 Query 371443 GAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGA 371502 || |||| |||||| ||||||| ||| |||| |||||| || || | || | || Sbjct 8637409 GAGGATACACCTGCTAGATGTAGGGAAAAAATTGTTAAATCTACAGAGGCACCTGCATGG 8637350 Query 371503 GCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTTC 371545 || | | || |||| |||||||| ||||||||||| |||| Sbjct 8637349 GCGAGATTACCTATTAAGGGCGGGTATACTGTTCAGCCTGTTC 8637307 >seq113 Length=9792114 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | |||||| ||| |||||||||||||| ||||||| Sbjct 7226608 CACTTCAGTACCTGGCTCCTTATTCTGGTTGTTCTATGGGAGAATATTTTAGGGATAATG 7226667 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | || |||||||| |||||||| ||||| ||| ||||| |||| Sbjct 7226668 GCAAGCATGCTTTGATCATCTATGATGACTTATCCAAACAGGTCAA 7226713 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || ||||||||||| || || ||||| || || |||||||| || || ||||| Sbjct 7227038 AATACCTGTCCATCAGTAATGGAAATGACATTCGTTGGAATATAAGCGGACACGTCACCA 7226979 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||||||||| | || |||||||| || | || |||||||||||| Sbjct 7226978 GCTTGTGTTTCAATGACTGGTAAGGCAGTCAAGGAGCCACCACCAAAA 7226931 >seq163 Length=7758102 Score = 91.5 bits (100), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| ||||| |||| ||||| || | || || ||||| | Sbjct 3642 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATTT 3583 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT---- 225617 || ||||| || ||||| ||||| | | || |||| ||||| |||||||| Sbjct 3582 TCCAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTGACAAGGAATGCCTTCCTTCTTT 3523 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||||| ||| ||| | ||||||| || || || || | ||||| Sbjct 3522 GTCTTGGATCTTTGACTTGACATTCTTAATGGTGTTATTGGGCTCTACTTCAAGGGTGAT 3463 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 ||| | | |||| || || ||||| | || |||| Sbjct 3462 TGTCGTACTGGTCAGGGTCTTCATGAAGATCTGTATTT 3425 >seq107 Length=10112982 Score = 91.5 bits (100), Expect = 4e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 || |||||||| |||||| |||||| | || ||||| | ||||| || | ||| | Sbjct 238102 ACAAAGTCTCAACACAAGGCAAAGAGTGCACTCCTTTTGAATGTTGTAGTCAGACAAGAT 238161 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||| || ||||| ||||||||||| |||| || || || || ||||| || Sbjct 238162 ATATCCATCTTCCAGTTGCTTACCAGCGAAGATCAGTCTCTGCTGATCAGGAGGAATTCC 238221 Query 225612 TTCCTTGTCTTGG 225624 |||||| |||||| Sbjct 238222 TTCCTTATCTTGG 238234 >seq382 Length=3269203 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| ||||| ||||||||||| |||||||| || || || || || || | Sbjct 451172 ATACTTCGGGATGTCCAAAGAATCAGAATAAGTGTTGATAGAGAATTGGGTCTCCCCCTC 451231 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||||||||| || | ||||| ||||| | ||| ||||| Sbjct 451232 CAGCTGGATCAAAGAAAGTTGTATTTAAATTACGATCGGTTAA 451274 >seq6 Length=31634872 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 || |||||||| ||||| || |||||||| || ||||| | | || ||| | ||| || Sbjct 11568220 ACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTCGTTATCAGACAAGGT 11568279 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || |||||| | |||| ||||| || | || || || ||||| | Sbjct 11568280 CTGTCCAAATTGCAGCTGCATGGCAGCAAAGATGTTTC--TCCTGATCAGGAGGAATTTC 11568337 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||||||| ||| ||| ||| | || ||||| | ||| || || | Sbjct 11568338 TTTCTTGTCTTGGATCTTGGCCTTTACATTTTCTTTTGTATCTGAAGGTTCAACCTCAAG 11568397 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 11568398 AGTGATGGTCTTCCCTGT 11568415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192187278101246