Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq30 150 1e-31 seq107 96.9 3e-15 seq168 95.1 1e-14 >seq30 Length=19208098 Score = 150 bits (166), Expect = 1e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || ||| Sbjct 15109594 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 15109535 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || ||||| || |||||||||||||| |||||||| || ||||| |||| | Sbjct 15109534 ACCCCCAGGCCCATATCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 15109475 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || || ||||| || | ||||||||| ||||| || ||||| Sbjct 15109474 ACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCAT 15109434 >seq107 Length=10112982 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | || ||| ||| |||||||| ||| | ||| Sbjct 6826560 TTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATGCTTCTTGGGA 6826619 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| |||||||| ||||| |||||| Sbjct 6826620 ATGGAGAACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTACCT 6826667 >seq168 Length=7504001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/143 (76%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| |||| || || || || || ||||| |||| || | || ||| | Sbjct 3980905 ATGAGCTCCTTGTAGGGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTT 3980964 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCA-AGTCTTTCTACCCATTATCACCACGT 114380 || |||||||| ||| | || ||||||||||| ||||| |||||||| |||||||| | Sbjct 3980965 CAAAGGTCTATGCTTCTTGGAAATGGAGAACCAGGGTCTTCCTACCCATAATCACCACAT 3981024 Query 114381 TCTGCTTACC-TCTGTCGGAAGA 114402 |||| ||||| ||| ||||||| Sbjct 3981025 TCTGTTTACCATCT-ACGGAAGA 3981046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406051777883974