Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq347 188 6e-43 seq25 107 2e-18 seq21 107 2e-18 seq149 98.7 8e-16 >seq347 Length=3625835 Score = 188 bits (208), Expect = 6e-43 Identities = 571/868 (66%), Gaps = 22/868 (3%) Strand=Plus/Minus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||| | ||||| || ||||| || |||||||| || |||| ||||| Sbjct 2989038 TACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCAATGAAATATTCTCTGTAAAGTCAAA 2988979 Query 4331 CGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGC--AATCGGTCAGC 4387 |||| | | ||| | || || | || || | || | |||| ||| || Sbjct 2988978 TGGATCTTCTACCTTGAGCACCTTGTTAAAACCC---AGTTTCAGCCTTAATCTGTCTGC 2988922 Query 4388 TACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAG 4447 || ||||| || ||| |||| | || || |||| || | ||| || | Sbjct 2988921 CACGAATTCAATGTACCTCTTCATTAAAGTGCGATTCATTCTGATAAGCTTCATAGACAA 2988862 Query 4448 CGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTT 4507 || | || | ||||| | |||| | | || || | | ||||| ||||||| | | Sbjct 2988861 GGCCTTAGT-AGGAACTCCTATTCTGTCCTAACAGCATTAATAATTATTTCTTTTACTCT 2988803 Query 4508 ATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567 | | || ||||| | || | ||| |||| || || | ||| ||||| || | Sbjct 2988802 CTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACATTAGGCAGGTAAAGTCACAGTGTGA 2988743 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 ||| || |||||| |||| ||||| || ||||| || | || ||||| || ||| || Sbjct 2988742 ACCCTCATCTCTGTTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAATCCTTATTT 2988683 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 || || || ||||| | ||||| || ||| |||||| ||| |||||| || ||| Sbjct 2988682 CTTGAGGCAGAATATCGATGCAAAAGAACCAAGAAAGAAGATGT-TTCTACTGC---AAA 2988627 Query 4688 CGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 ||||| || | | | | | |||| ||||||| |||||| | ||| ||||| | Sbjct 2988626 AGCTAC-AACATGCTCTCTATAGTAGCTT-CTTTGTCCCCAATCCAATGTAAGGCCCAAT 2988569 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTT 4803 || | ||||| || || ||||| | | || || | || | ||| |||| | Sbjct 2988568 CTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGCCCTGAAGAGAAATTCCCTTTCCT 2988509 Query 4804 CAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT 4863 | | |||| | | | |||||| | || || ||||||||||||||| ||| |||| Sbjct 2988508 TAGAA---TCTTTAGTGTCAGTGTCAGTAAGGAGACTATACATTTCAGAACATATGTTTT 2988452 Query 4864 CTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAA 4923 | | ||||| ||||| | || ||||| | |||||||| | |||||||| | | || Sbjct 2988451 CCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAA 2988392 Query 4924 ATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACAT 4983 | || | |||||||| | | || || ||||| | |||||| || | || ||||| Sbjct 2988391 GT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTGTTGCAAAGAA-GTCAGAACAT 2988334 Query 4984 GAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTA 5043 | |||||||| || | | |||||| || | |||||| | | ||||| | | Sbjct 2988333 GTGATATAAAATATTTCTTCTCAGGCAGGAGGGCTCCCCAGTGCTGAATGTCTTTGGAAA 2988274 Query 5044 AATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATAT 5103 ||| || || ||| | || ||||| || || || ||||| || ||||| |||||||| Sbjct 2988273 GATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTTTCTTATACATTTGCCAAATAT 2988214 Query 5104 CAGGATACTGAATCGGAAGTATGACAAA 5131 || | || | | | | || |||||||| Sbjct 2988213 CATGGTATTAATTAGAAAAGATGACAAA 2988186 >seq25 Length=20042899 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || |||||||| |||| || || Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || |||||||| || ||||| ||| Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 6229173 Query 4692 AC 4693 || Sbjct 6229174 AC 6229175 Score = 100 bits (110), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 6231270 TCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 6231329 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || ||||| | ||||||||| | |||||||| | | ||||| Sbjct 6231330 ATTTGGAAGCCATAGAAGCAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATC 6231384 >seq21 Length=21368495 Score = 107 bits (118), Expect = 2e-18 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| ||||| || || ||||||||||||||||| || || | Sbjct 10311338 AAAATCTT---ACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 10311282 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| ||||| | ||||| || |||||||| || | ||| |||| Sbjct 10311281 TGTGAGAGATAAAATACTTCTCGTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTAG 10311222 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 10311221 ATAAGTCAAC 10311212 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || ||||| || ||||| ||||| |||||||| ||||| ||||| || ||||| |||||| Sbjct 10335185 TGATATTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTCC 10335126 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 10335125 ATAAAATCAAAGGGATT 10335109 >seq149 Length=8240324 Score = 98.7 bits (108), Expect = 8e-16 Identities = 126/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||| |||| | || |||| || || || | | || || | Sbjct 3276546 AGCCCTTGTGAAAACAGACATTGAAATAGCCTTTCCTTGTGGTTGTTATGAAAGAGTACC 3276487 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 | | || ||||| ||||| | |||||||| || || || || || ||||| | |||| Sbjct 3276486 TACAAGTTCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGA 3276427 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAAT 31934 ||| || ||||||||| |||| || | ||||||||||||| |||||||| Sbjct 3276426 AGATTACAGAGGAAACATTGGTGTTATAATGTTTAATTTTGGCAAAGAAAAAT 3276374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426932448150497