Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq347 253 3e-62 seq10 154 2e-32 seq74 125 1e-23 seq25 125 1e-23 seq21 102 1e-16 seq149 89.7 7e-13 >seq347 Length=3625835 Score = 253 bits (280), Expect = 3e-62 Identities = 597/888 (67%), Gaps = 15/888 (2%) Strand=Plus/Minus Query 47839 TAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCA 47898 |||||||||| | |||| ||| | || | ||||| || | ||||| || ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 47899 ATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTA 47958 |||| ||||| || |||| |||||||||| || | || | || ||||| || | Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 47959 ATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCA 48018 || | | ||| ||||| |||||||| || || || ||||| | | ||||| Sbjct 2988943 GTTTCAGCCTTAATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTCA 2988884 Query 48019 TTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCAT 48078 ||| ||||| || | | | |||| ||| ||| ||| | ||| | | ||||||| Sbjct 2988883 TTCTGATAAGCTTCATAGACAAGGCCTTAGTAGGAA-CTCCTATTCTGTCCTAACAGCAT 2988825 Query 48079 CCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTA 48138 | ||||| | |||| | | ||| ||| | | || | || ||||||| Sbjct 2988824 TAATAATTATTTCTTTTACTCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACATTA 2988765 Query 48139 AACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 48198 || | ||| ||||| || ||| |||||||| |||| | ||| || |||||||||| Sbjct 2988764 GGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATGTGA 2988705 Query 48199 GACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGA 48258 | || ||||| | ||| ||| ||||| || ||||| | || ||||| ||| ||||| Sbjct 2988704 GGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAAAGA 2988645 Query 48259 ATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT- 48317 | ||| |||||| || ||| || || ||||| || | ||||| |||| Sbjct 2988644 AGATGT-TTCTACTGC---AAAAGCTACAACATGCTCTCTATAG-TAGCTTCTTTGTCCC 2988590 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| || |||||||| | |||||||||||||||| || |||| || || Sbjct 2988589 CAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGCCC 2988530 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 | |||||||| | |||| || ||||||| || ||| || | | |||||||||| Sbjct 2988529 TGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTATACA 2988470 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 |||| || || ||||| | || || ||||| | || || || | |||||||| | Sbjct 2988469 TTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGTAA 2988410 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 |||| || || | || | | || ||| || || | | || |||||||| | | Sbjct 2988409 TCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTGTTG 2988351 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTT-TTCGTTGGAAGTCAGTTTATTCCAG 48614 |||| || | | |||||| ||||||||||| ||| || || || |||| Sbjct 2988350 CAAAGAA-GTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAG-GAGGGCTCCCCAG 2988293 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | | || ||||| || | ||| || || |||||||| ||||| || ||||| ||||| Sbjct 2988292 TGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTTTC 2988233 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAA-ATAACAAA 48721 |||||||| | ||| |||||| ||||| ||| | ||| || ||||| Sbjct 2988232 TTATACATTTGCCAAATATCATGGTATT-AATTAGAAAAGATGACAAA 2988186 >seq10 Length=25572408 Score = 154 bits (170), Expect = 2e-32 Identities = 239/341 (70%), Gaps = 9/341 (3%) Strand=Plus/Plus Query 48126 TGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCG 48185 ||| | |||||||| | ||||| ||||| || | |||| ||||||| ||||| |||| Sbjct 5064964 TGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACCT-CATCTCTGCTAATAAATTAA 5065022 Query 48186 TTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA 48245 || ||||||||||| || ||||| | ||| |||| |||||| | |||||| | ||| Sbjct 5065023 TTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAA 5065082 Query 48246 GATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG 48305 || ||||||||||| || | ||||| | |||| || | || |||||| Sbjct 5065083 GAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACATGCTCTCC------- 5065135 Query 48306 GCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 || || ||| | | ||| || |||||||||||||| |||||| | || Sbjct 5065136 -ATTTGTCCCCAATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTACCCAAGGCGTCATT 5065194 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAA 48425 | ||| |||| || |||| | |||| ||| |||||||| |||||| || || | Sbjct 5065195 TTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGG 5065254 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTG 48466 |||||||||||||| || || || ||||| || || || || Sbjct 5065255 AGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTG 5065295 >seq74 Length=12003515 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 || || | ||| |||||||| || || | | ||||||||||||||| ||||||| Sbjct 11042978 GAGCCCTCATAGGTTTCATACGGGCCATGGTCCTTAGCTAGTTCACAACTGGCTTCCAGG 11042919 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 ||||| |||||||| ||||| ||||||| |||||| | ||| || || ||| ||| Sbjct 11042918 GCTCCATAATAAATGGTTTCAAAAATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCA 11042859 Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 || ||||| | || ||||| |||||||||| || ||||| ||||| ||||| ||| Sbjct 11042858 AAAGGATACCTCATCAGGATAAAAGCATCTGCTAGACCTTGAACCCCAATTCCAATTGGT 11042799 Query 77535 CTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 11042798 CGATGGCGTTTATTTGA 11042782 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 11048361 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 11048302 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| |||||||| ||||| || |||| | |||||| Sbjct 11048301 TCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAACTG 11048242 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 11048241 TTTCTTACACCAT 11048229 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||||||||| || || |||||| || |||| || || || || || | Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| ||||||||||||||||||||||| ||||| ||||| || | | ||| | Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 |||||| |||||||| | || || ||| ||| || | ||||| |||| Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 11050847 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || ||||| || || ||| Sbjct 11027254 GTACCAGCATTGAAAAGAGTGGGAGAGGCATGAGTAAACCACTTCTCAGAGAGAAGGTTG 11027195 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || ||||| || |||||| || || | ||| | ||||||| Sbjct 11027194 TATGTTTCAATAGCAGCATCAATGTCTTCTTCATGAATCCCAACAGATACCCTCATCAAC 11027135 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 11027134 ATATGTTGTGGTCTTTCAGCC 11027114 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 |||||| |||||||| ||||||||||| ||||||| ||||||||||||||||| ||| Sbjct 11037519 TATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGGCATTCATTTGGACAC 11037460 Query 77976 ATCAATGACCAGTC 77989 ||||| |||||||| Sbjct 11037459 ATCAAAGACCAGTC 11037446 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || || | ||||| || | || | || Sbjct 11037058 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAATAGGTCCCTGGCACGCTGC 11036999 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| ||||| || ||||| || | ||| || ||||| | ||| || ||||||| || Sbjct 11036998 TCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCAAGGC 11036939 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 11036938 TCCAGGTAAATAGCAAATGCCCCAGGTCG 11036910 >seq25 Length=20042899 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| || ||||||| ||| ||||| ||| Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| || |||||||| || ||||| || Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGC 6229172 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| | | |||| ||| ||| | || ||||| ||||| Sbjct 6227467 GTTCATTTAGAAGTCAGCATCCAGGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 6227526 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | ||||| || || ||||| || ||||||| ||| || Sbjct 6227527 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 6227586 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 6227587 ATTCTCCATAAAGTCAAATGGATT 6227610 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| || |||||||||||||| || ||||| ||||| |||||||| | ||| |||||| Sbjct 6232094 TACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATG 6232153 Query 48698 GTATTGGATTGGGAAAATAACAAA 48721 ||||| ||| ||||| || ||||| Sbjct 6232154 GTATTCGATAGGGAAGATGACAAA 6232177 >seq21 Length=21368495 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | || | Sbjct 10317097 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 10317038 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||| ||||| || || ||||||||||| ||||| || |||||||| || ||||| | Sbjct 10317037 TTAGCCAGAATATGGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 10316978 Query 48283 C 48283 | Sbjct 10316977 C 10316977 >seq149 Length=8240324 Score = 89.7 bits (98), Expect = 7e-13 Identities = 173/251 (69%), Gaps = 7/251 (3%) Strand=Plus/Plus Query 45970 TGAGCTATTCTATCACCCGTATTTATTTCAAATATATCTTTTCCATTATTGATCAGAATG 46029 || || |||| ||||||| | || | ||||||| | ||||| ||| ||| | || || Sbjct 3276343 TGGGCAATTCAATCACCCTTTTTGAGTTCAAATTTTTCTTTGCCAAAATTAAACATTATA 3276402 Query 46030 ACTCCAATTGTCCCTCTATAATCTTCATCTATTACTCCCCCTCCCACATC---GATACCT 46086 || ||||| | ||||| |||||||||||| | || || |||| ||||| || | Sbjct 3276403 ACACCAATGTTTCCTCTGTAATCTTCATCTGTGACACCAGCTCCTACATCTATGAAGTGT 3276462 Query 46087 TTTAGAGACAGTCCAGATCTAGGAGCTATTCTTCCATAACAGAATTTGGGCATAGACATC 46146 ||| || || ||||| || | || || |||| ||||||| || | | || Sbjct 3276463 TTTGCAGCCAAGCCAGAACTTGTAGGTACTCTTTCATAACAACCACAAGGAAAGGCTATT 3276522 Query 46147 CGAATATCTGTTTTAATCAATCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCAC 46204 ||| |||||||| | ||| ||||||||| || || || ||||| || || ||| Sbjct 3276523 TCAATGTCTGTTTTCA-CAA-GGGCTTTCTCCATGGGTGGAATTGTATAATCATAGACAC 3276580 Query 46205 TGTATAAATCA 46215 |||| |||||| Sbjct 3276581 TGTACAAATCA 3276591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694473346249760