Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq347 244 2e-59 seq10 143 4e-29 seq74 127 3e-24 seq25 125 1e-23 seq21 111 2e-19 >seq347 Length=3625835 Score = 244 bits (270), Expect = 2e-59 Identities = 595/888 (67%), Gaps = 15/888 (2%) Strand=Plus/Minus Query 46328 TAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCA 46387 |||||||||| | | || ||| |||| | ||||| || | ||||| || ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 46388 ATGATATATTTTCCATAAAATCAAACGGAT-TAGTAACATTATAAAtttttttAAATCCT 46446 |||| ||||| || |||| ||||| |||| | || | | | | || || ||| || Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 46447 AATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTC 46506 ||| | | | ||| ||||| |||||||| || ||| | ||||| | | |||| Sbjct 2988943 GTTTCAGCCTTAA-TCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTC 2988885 Query 46507 ATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCA 46566 |||| || || || | | | |||| ||| ||| ||| | ||| | | |||||| Sbjct 2988884 ATTCTGATAAGCTTCATAGACAAGGCCTTAGTAGGAA-CTCCTATTCTGTCCTAACAGCA 2988826 Query 46567 TCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATT 46626 | ||||| | ||||| | | ||| ||| || | || | || |||||| Sbjct 2988825 TTAATAATTATTTCTTTTACTCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACATT 2988766 Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 | || | ||| ||||| || || |||||||| |||| | ||| || ||||||||| Sbjct 2988765 AGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATGTG 2988706 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || |||||||| | ||| || ||||| || ||||| | || ||||| ||| |||| Sbjct 2988705 AGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAAAG 2988646 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG- 46805 || ||| |||||| || || || |||| ||||| || | || || || | Sbjct 2988645 AAGATGT-TTCTACTGCA---AAAGCTACAACATGCTCTCTATAG-TAGCTTCTTTGTCC 2988591 Query 46806 --AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 |||||| | |||||||| | | |||||||||||||| || |||| || || Sbjct 2988590 CCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGCC 2988531 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 | |||||||| | |||| | | ||||||| | || || | | ||||||||| Sbjct 2988530 CTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTATAC 2988471 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 ||||| ||| |||||||| | || || ||||| | || || || | ||||| ||| Sbjct 2988470 ATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGTA 2988411 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 ||||| || ||| | || | | || ||| || || ||| || |||||||| | Sbjct 2988410 ATCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTGTT 2988352 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTT-TTCATCGGTAGTCAGTTTATTCCA 47102 ||||| || | || |||||| ||||||||||| ||| || || || ||| Sbjct 2988351 GCAAAGAA-GTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAG-GAGGGCTCCCCA 2988294 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 || | || ||||| || | ||| || || |||||||| || || || ||||| ||||| Sbjct 2988293 GTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTTT 2988234 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 |||||||| | ||| |||||| | |||| | | ||| || ||||| Sbjct 2988233 CTTATACATTTGCCAAATATCATGGTATTAATTAGAAAAGATGACAAA 2988186 >seq10 Length=25572408 Score = 143 bits (158), Expect = 4e-29 Identities = 295/434 (68%), Gaps = 11/434 (3%) Strand=Plus/Plus Query 46601 GTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTC 46660 ||| ||| | || ||| | |||||||| | ||||| ||||| || | ||| |||||| Sbjct 5064950 GTGTATGTAGCAGCTGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACCT-CATCTC 5065008 Query 46661 TACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAA 46720 | ||||| |||| || ||||||||||| |||||||| | ||| | || |||||| | | Sbjct 5065009 TGCTAATAAATTAATTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGA 5065068 Query 46721 ATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTC 46780 |||| | ||||| ||||||||||| || | ||||| | | || || ||| Sbjct 5065069 ATATTAATGAAAAAGAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACAT 5065128 Query 46781 TCTCTCCGTAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTA 46840 |||||| | || | | |||| | | ||| || ||||| ||||||| Sbjct 5065129 GCTCTCC--ATTTGTCCCC------AATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTA 5065180 Query 46841 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACAT 46900 | |||||| | ||| ||| |||| || |||| | |||| | |||||||| | Sbjct 5065181 CCCAAGGCGTCATTTTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGT 5065240 Query 46901 ATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATC 46960 | || || || | |||||||||||||| ||||| |||||||| ||||| || || || Sbjct 5065241 AAGTGTCAATAAGGAGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTG-GATG 5065299 Query 46961 CGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCT 47020 | | |||| || || |||||||| | ||| |||| | | |||||| | Sbjct 5065300 CTAGAGAACA-GAGGCATCTGTAATCTGAATTTCTTGGTTAAATTGCTACACCAAATTTT 5065358 Query 47021 CATTCACTATTCCA 47034 |||||||||| ||| Sbjct 5065359 CATTCACTATGCCA 5065372 >seq74 Length=12003515 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 11048361 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 11048302 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || ||||||||||||||||| ||||| || |||| | |||||| Sbjct 11048301 TCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAACTG 11048242 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 11048241 TTTCTTACACCAT 11048229 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||||||||| || || |||||| || | || || || || || || | Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| ||||||||||||||||||||||| ||||| ||||| || | | ||| | Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 |||||| |||||||| | || || ||| ||| || | ||||| |||| Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 11050847 Score = 118 bits (130), Expect = 2e-21 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCC---GTCCTTTTCAGCTAGTTCGCAACTCGCCTCT 76006 || || | ||| ||||| || | || |||||| ||||||||| ||||| || || Sbjct 11042978 GAGCCCTCATAGGTTTCATACGGGCCATGGTCCTT---AGCTAGTTCACAACTGGCTTCC 11042922 Query 76007 AACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTA 76066 | || || |||||||| ||||| ||||||| |||||| | ||| || || |||| Sbjct 11042921 AGGGCTCCATAATAAATGGTTTCAAAAATCTGCTTATTCAATAATTGGGCCTCTGGACTC 11042862 Query 76067 TCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATA 76126 ||||||||||| | || ||||| ||||||||||| || ||||| ||||| ||||| Sbjct 11042861 TCAAAAGGATACCTCATCAGGATAAAAGCATCTGCTAGACCTTGAACCCCAATTCCAATT 11042802 Query 76127 GGTCTATGTCTCTTATTGGA 76146 |||| ||| | ||||| || Sbjct 11042801 GGTCGATGGCGTTTATTTGA 11042782 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 11011723 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGATG 11011664 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || ||||| |||| | Sbjct 11011663 GCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTGTCTAGT 11011604 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||| ||||| || | |||| ||||| || |||||||||| Sbjct 11011603 TCCACAGTGGTAACCCCACTGTATAAGCCTTGGATTACTTTCATGG 11011558 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| |||||||| ||||| || ||||| || || ||| Sbjct 11027254 GTACCAGCATTGAAAAGAGTGGGAGAGGCATGAGTAAACCACTTCTCAGAGAGAAGGTTG 11027195 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || || || || |||||| || |||| || | ||||||| Sbjct 11027194 TATGTTTCAATAGCAGCATCAATGTCTTCTTCATGAATCCCAACAGATACCCTCATCAAC 11027135 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 11027134 ATATGTTGTGGTCTTTC 11027118 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| |||||| |||||||| ||||||||||| ||| Sbjct 11037510 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGGCATTCATTTGGACACATCAAAGAC 11037451 Query 76580 CACTC 76584 || || Sbjct 11037450 CAGTC 11037446 >seq25 Length=20042899 Score = 125 bits (138), Expect = 1e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| |||||||||| ||| || || ||| Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || |||||||| || || || || Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 6229173 Query 46774 ACAAGTCTCTCTCC 46787 |||| | |||||| Sbjct 6229174 ACAACACGCTCTCC 6229187 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | ||||||||||||||| ||||| |||||||| || || Sbjct 6231269 ATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6231328 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || || || | ||||| |||||||| || ||| | |||||| || Sbjct 6231329 AATTTGGAAGCCATAGAAGCAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 6231388 >seq21 Length=21368495 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | ||| | Sbjct 10317097 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 10317038 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| ||||| || || ||||||||||| ||||| || ||||||||||| || || | Sbjct 10317037 TTAGCCAGAATATGGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 10316978 Query 46772 CGAC 46775 | || Sbjct 10316977 CAAC 10316974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712733806994880