Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq48 159 8e-34 seq662 131 4e-25 seq368 107 4e-18 seq139 105 2e-17 seq163 95.1 3e-14 >seq48 Length=15315231 Score = 159 bits (176), Expect = 8e-34 Identities = 171/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || || || ||||| |||||||| ||||||||||| || | | || Sbjct 866217 CTCAGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 866158 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| ||| Sbjct 866157 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCT 866098 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || ||| |||||| |||| | | |||| ||| |||||||||| Sbjct 866097 TCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCA 866041 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || ||||||||||| | ||||||| Sbjct 866040 AGGGTAATGGTCTTACCAGTCAGGGTCTTCACGAAAATCTGCATT 865996 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| |||||||| ||||||||||| || | | || | |||||| Sbjct 866997 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCT 866938 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || ||||| | |||||||||||| | | ||| |||||||| ||| Sbjct 866937 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 866878 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| |||||| |||| | | |||| | |||||||||||| || || || Sbjct 866877 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGTC 866818 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||||||||||| ||||||| Sbjct 866817 TTACCGGTCAGGGTCTTCACGAAGATCTGCATT 866785 Score = 140 bits (154), Expect = 7e-28 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| |||||||| ||||||||||| || | | || | ||||||| Sbjct 865980 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCT 865921 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 865920 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 865861 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| |||||| |||| | | |||| ||| |||||||||||| || || Sbjct 865860 TGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTGATT 865804 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || || || || | ||||||||||||| ||| Sbjct 865803 GTCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 ||||| | |||||||||||| | | ||| |||||||| ||||| || ||| |||||| Sbjct 865671 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 865612 Query 152031 GTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 |||| | | |||| ||| |||||||||||| ||||| || || || || || ||| Sbjct 865611 TTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTC 865555 Query 152088 TTCACGAAGACCTGCATT 152105 ||||| |||| ||||||| Sbjct 865554 TTCACAAAGATCTGCATT 865537 Score = 100 bits (110), Expect = 7e-16 Identities = 101/130 (78%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 151979 CCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTAC 152038 |||||||||||| | | ||| |||||||| ||||| || ||| |||||| |||| | Sbjct 866350 CCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAAT 866291 Query 152039 GCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||| ||| |||||||||||||||||| || || || || || ||||||||||| Sbjct 866290 GGTGTC---ACTGGGCTCTACTTCAAGAGTAATGGTCTTACCGGTCAGGGTCTTCACGAA 866234 Query 152096 GACCTGCATT 152105 || |||||| Sbjct 866233 GATTTGCATT 866224 >seq662 Length=1284721 Score = 131 bits (144), Expect = 4e-25 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 || ||||| | || || || |||||||| ||||||| ||| || | | || | ||| Sbjct 539889 CTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCA 539948 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| || |||||| || ||||| | |||||||||||| | | ||| |||||||| Sbjct 539949 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 540008 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTA 152066 ||||| || ||| |||||| |||| | | |||| ||| |||||||||||| || Sbjct 540009 TCTTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGTTA 540065 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | || || |||||||| |||| ||||||| Sbjct 540066 ATGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCATT 540104 >seq368 Length=3467158 Score = 107 bits (118), Expect = 4e-18 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || |||||||| |||||||||||||| | | | | | ||||| ||||| | Sbjct 925347 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCTCT 925288 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || | || || || | ||||||||| | | || || ||||| |||| ||||| Sbjct 925287 TTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTTTG 925228 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||||||| |||| | | |||| ||| ||| || |||||||| || || |||||| Sbjct 925227 GCTTTGACATTCTCCATGGTGTC---ACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCC 925171 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 | | |||||||| |||| |||||| Sbjct 925170 TTCAAGGTCTTCACAAAGATCTGCAT 925145 >seq139 Length=8626845 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || |||||||| ||||| ||||| || | | ||| | |||||| Sbjct 1931017 AGGACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1930958 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| |||||||||||||| | | || ||||| || ||| Sbjct 1930957 TCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCT 1930898 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | | || ||| ||| || || || || || Sbjct 1930897 TGGATCTTAGCCTTCACATTCTCGATGGTATC---ACTGGGCTCCACCTCCAGGGTGATG 1930841 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||| ||||||| |||||| || Sbjct 1930840 GTCTTGCCTGTTAGGGTCTTTACGAAGATCTGCATCTT 1930803 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || |||||||| ||||||||||| || | | ||| | |||||| Sbjct 1931473 AGAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCT 1931414 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||| ||||| | | || ||||| || || Sbjct 1931413 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCC 1931354 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | | || ||| ||| || || || || || Sbjct 1931353 TGGATCTTGGCCTTCACATTCTCGATGGTATC---ACTGGGCTCCACCTCCAGGGTGATG 1931297 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 1931296 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931262 >seq163 Length=7758102 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| |||||||| ||||||||||| || | | || ||||| | Sbjct 3642 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATTT 3583 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAG------ATTCCTTCC 152006 || || ||| || || ||||| | ||||||||||| | | || ||||||| Sbjct 3582 TCCAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGT--GACAAGGAATGCCTTCCTTCT 3525 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || ||| |||||| ||| | | ||| |||||||||||| || Sbjct 3524 TTGTCTTGGATCTTTGACTTGACATTCTTAATGGTGTTATTGGGCTCTACTTCAAGGGTG 3465 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 || || | | || || ||||||| ||||| ||| |||| |||| Sbjct 3464 ATTGTCGTACTGGTCAGGGTCTTCATGAAGATCTGTATTTCCCCCT 3419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153488042047539