Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-20 seq347 113 5e-20 >seq25 Length=20042899 Score = 114 bits (126), Expect = 1e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || ||||| | |||||| |||||||| | || ||||||||||||||||| || Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||||| ||||| || || |||||||| || || || || || |||||||| Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 6229173 Query 23653 ACAAGACG 23660 |||| ||| Sbjct 6229174 ACAACACG 6229181 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 23762 TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATAT 23821 |||||| | |||| | || || || ||||| || | |||||||||||||||||| || | Sbjct 6231259 TTTCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 6231318 Query 23822 TTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 |||| || ||||| || || ||||| || || | |||||| Sbjct 6231319 TTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTC 6231358 >seq347 Length=3625835 Score = 113 bits (124), Expect = 5e-20 Identities = 373/574 (65%), Gaps = 7/574 (1%) Strand=Plus/Minus Query 23494 TACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCA 23553 || || |||| || || | ||| ||||| ||| || ||||| || |||| | |||| Sbjct 2988777 TAGTTGAACATTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCA 2988718 Query 23554 TTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAAT 23613 || |||||||| | || ||||| |||||| ||| || | || ||||| | ||||| Sbjct 2988717 TTGGAAAATGTGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAA 2988658 Query 23614 GATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTT 23673 || || |||||| || || || || ||| || |||| | | | | | || Sbjct 2988657 GAACCAAGAAAGAAGATGTT-TCTACTGC---AAAAGCTACAACATGCTCTCTATA-GTA 2988603 Query 23674 GCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT 23733 || | | || |||||| | | | ||||| | || |||||||| ||| Sbjct 2988602 GCTTCTTTGTCCCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATC 2988543 Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATT 23793 ||||||| || | |||||||| |||| | | |||| | | | || ||| | Sbjct 2988542 ATTTCAATGGCCCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTA 2988483 Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853 || | |||||||||||||||| || ||||| | ||||| ||||| |||| || || Sbjct 2988482 AGGAGACTATACATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAG 2988423 Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913 | ||||| | | ||||| || | || | | | | || ||||| | | || Sbjct 2988422 CAGGCTTCTGTAATCTGAACTTCTTGGCTAAGTGCTCCATC-AAGTTTTCTGTCAGCATG 2988364 Query 23914 CCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT 23973 |||||||| | |||||| ||| ||||||| | |||||||| | | | |||| Sbjct 2988363 CCATCACTTGTTGCAAAG-AAGTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAGG 2988305 Query 23974 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033 | | ||| | | ||| ||||| || | ||| || || ||| |||| ||||| Sbjct 2988304 AGGGCTCCCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAA 2988245 Query 24034 GCCAAGGCACGCTTATACATTAGCCAAATATCAT 24067 ||| || |||||||||| |||||||||||| Sbjct 2988244 GCCTCAGCTTTCTTATACATTTGCCAAATATCAT 2988211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521341272832600