Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq25 114 1e-20
seq347 113 5e-20
>seq25
Length=20042899
Score = 114 bits (126), Expect = 1e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592
||||| || ||||| | |||||| |||||||| | || ||||||||||||||||| ||
Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113
Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652
| ||| ||||||| ||||| || || |||||||| || || || || || ||||||||
Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 6229173
Query 23653 ACAAGACG 23660
|||| |||
Sbjct 6229174 ACAACACG 6229181
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 23762 TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATAT 23821
|||||| | |||| | || || || ||||| || | |||||||||||||||||| || |
Sbjct 6231259 TTTCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 6231318
Query 23822 TTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861
|||| || ||||| || || ||||| || || | ||||||
Sbjct 6231319 TTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTC 6231358
>seq347
Length=3625835
Score = 113 bits (124), Expect = 5e-20
Identities = 373/574 (65%), Gaps = 7/574 (1%)
Strand=Plus/Minus
Query 23494 TACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCA 23553
|| || |||| || || | ||| ||||| ||| || ||||| || |||| | ||||
Sbjct 2988777 TAGTTGAACATTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCA 2988718
Query 23554 TTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAAT 23613
|| |||||||| | || ||||| |||||| ||| || | || ||||| | |||||
Sbjct 2988717 TTGGAAAATGTGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAA 2988658
Query 23614 GATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTT 23673
|| || |||||| || || || || ||| || |||| | | | | | ||
Sbjct 2988657 GAACCAAGAAAGAAGATGTT-TCTACTGC---AAAAGCTACAACATGCTCTCTATA-GTA 2988603
Query 23674 GCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT 23733
|| | | || |||||| | | | ||||| | || |||||||| |||
Sbjct 2988602 GCTTCTTTGTCCCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATC 2988543
Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATT 23793
||||||| || | |||||||| |||| | | |||| | | | || ||| |
Sbjct 2988542 ATTTCAATGGCCCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTA 2988483
Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853
|| | |||||||||||||||| || ||||| | ||||| ||||| |||| || ||
Sbjct 2988482 AGGAGACTATACATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAG 2988423
Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913
| ||||| | | ||||| || | || | | | | || ||||| | | ||
Sbjct 2988422 CAGGCTTCTGTAATCTGAACTTCTTGGCTAAGTGCTCCATC-AAGTTTTCTGTCAGCATG 2988364
Query 23914 CCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT 23973
|||||||| | |||||| ||| ||||||| | |||||||| | | | ||||
Sbjct 2988363 CCATCACTTGTTGCAAAG-AAGTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAGG 2988305
Query 23974 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033
| | ||| | | ||| ||||| || | ||| || || ||| |||| |||||
Sbjct 2988304 AGGGCTCCCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAA 2988245
Query 24034 GCCAAGGCACGCTTATACATTAGCCAAATATCAT 24067
||| || |||||||||| ||||||||||||
Sbjct 2988244 GCCTCAGCTTTCTTATACATTTGCCAAATATCAT 2988211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521341272832600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |