Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq48 150 1e-31 seq139 105 5e-18 seq662 102 6e-17 seq368 86.0 5e-12 seq107 84.2 2e-11 >seq48 Length=15315231 Score = 150 bits (166), Expect = 1e-31 Identities = 176/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||||||||||||||| | | |||||||| || ||| ||| || ||||||||||| Sbjct 866230 TTGCATTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTA 866171 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || |||| | || |||||||| ||||||||||||||||| | |||||| || Sbjct 866170 GTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 866111 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | ||| | ||||||||| || ||||| ||| | | ||| | |||||||| || Sbjct 866110 AGGAGGGATACCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGG 866052 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| ||||| || || |||||||||||||| || ||||| Sbjct 866051 GCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACGAAAATCTGCAT 865997 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||||||||||||||| | | |||||||| || ||| ||| || ||||||||||| || Sbjct 865999 CATTCCCCCTCTCAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 865940 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| ||||| ||||||||||| | |||||| || | Sbjct 865939 CGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGG 865880 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||||| || || ||||| ||| | | ||| | |||||||| || | Sbjct 865879 AGGGATGCCTTCTTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCT 865821 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTG 44334 | || || | || || ||||| || || | ||||||||||||||| || Sbjct 865820 CTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| | || |||| ||| || ||| ||| || ||||||||||| || | Sbjct 867012 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 866953 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || |||||||| ||||| ||||||||||| | |||||| || | ||| Sbjct 866952 AGGGTACGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 866893 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| || ||||| ||| | | ||| | |||||||| | || || Sbjct 866892 ATGCCTTCCTTATCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTAGGCTCTAC 866834 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| || || ||||||||||||||||| ||||| Sbjct 866833 TTCAAGGGTGATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 866786 >seq139 Length=8626845 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | || ||||| || || ||| || ||||| ||||| || Sbjct 1931264 CATACCACCCCTCAGACGAAGGACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTC 1931205 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | ||| || || | Sbjct 1931204 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGG 1931145 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||| || ||| ||||| ||||| | | ||||| || || || Sbjct 1931144 AGGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTC 1931085 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || ||||||||||| ||||| ||||| Sbjct 1931084 CACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931034 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | || ||||| || || ||| || ||||||||||| || | Sbjct 1931488 CCACCCCTCAGGCGAAGAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 1931429 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || |||||||| | | ||| || || | ||| Sbjct 1931428 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGA 1931369 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||| || ||| ||||| ||||| | | ||||| || || |||||| Sbjct 1931368 ATACCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACC 1931309 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||| ||||| ||||| Sbjct 1931308 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931262 >seq662 Length=1284721 Score = 102 bits (112), Expect = 6e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 44114 CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT 44173 || |||| |||| |||| ||| |||||| ||| || ||||||| ||| || | || Sbjct 539880 CCCCTCAAGCTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACAGG 539939 Query 44174 TGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACA 44233 | | || |||||||| ||||| ||||||||||| | |||||| || | ||| | Sbjct 539940 GTACATCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATG 539999 Query 44234 CCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTC 44292 |||||||| || ||||| ||| | | ||| | |||||||| || || || || Sbjct 540000 CCTTCCTTATCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTC 540058 Query 44293 CACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| ||||| | || ||||||||||| ||||| ||||| Sbjct 540059 AAGGTTAATGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCAT 540103 >seq368 Length=3467158 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 44133 GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCT 44192 |||| || ||| ||| || |||||||||||||| | ||| || | || || |||| Sbjct 925349 GGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCT 925290 Query 44193 GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCT 44252 || || |||| |||| ||||||||| || | ||| | || ||||| | || | Sbjct 925289 CTTTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGAT-T 925231 Query 44253 TCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 | |||| | ||| | |||||||| || |||||||| | || || ||||| ||| Sbjct 925230 TTGGCTTTGACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCC 925171 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||||||||| ||||| ||||| Sbjct 925170 TTCAAGGTCTTCACAAAGATCTGCAT 925145 >seq107 Length=10112982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGC 44169 ||||| | ||||||||||| ||| ||| |||| ||||||||| |||||||| || | | Sbjct 238097 CCCCCACAAAGTCTCAACACAAGGCAAAGAGTGCACTCCTTTTGAATGTTGTAGTCAGAC 238156 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | | | || ||||| ||||| || || ||||||| | ||||||||| | ||| Sbjct 238157 AAGATATATC-CATCTTCCAGTTGCTTACCAGCGAAGATCAGTCTCTGCTGATCAGGAGG 238215 Query 44230 CACACCTTCCTTTTC 44244 | |||||||| || Sbjct 238216 AATTCCTTCCTTATC 238230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359891644396053