Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq373 143 4e-29 seq37 96.9 5e-15 >seq373 Length=3354714 Score = 143 bits (158), Expect = 4e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 9253 GTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCAC 9312 || |||||||| | | || ||| |||||||||||| || ||||| || |||||||| Sbjct 2693100 GTTGTCTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCGCAT 2693041 Query 9313 ACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCA 9372 || || || ||||||| ||||| || ||||| |||||||| || ||||| ||||| ||| Sbjct 2693040 ACTCTATTATGTTCCCGAAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGACCA 2692981 Query 9373 AAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATG 9432 || ||||||| || || || | || || || || || | || || |||||||| Sbjct 2692980 AAGACCTCTTGGCCCACGGCAAAGCGATGGTGCTCAGGGACATGAGGGGGGTAGATCATC 2692921 Query 9433 TGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 | |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 2692920 TCTGCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 2692869 Score = 143 bits (158), Expect = 4e-29 Identities = 202/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| ||||| || ||| | |||| |||||||| || | || | |||| ||| Sbjct 2695058 GGACAGCCCTTCACATTGTTGCAGATGAGAGACTGGATTGAGGCTGTGTTGATGATTTTA 2694999 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || || || || ||||| ||||| ||||||||||| || || || || || Sbjct 2694998 AAACCTACTTCCCCACCGAAAGTGCTAGGCTTCCAGTAGTTAGGAGAACATATAGGATTA 2694939 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||||||| ||||| | |||||| || || || || || | ||| ||||||| |||||| Sbjct 2694938 CCCATGAGTCCTTTCAAGGAGAATGGTGCTCCTAATTCTACCATGGTCTCACCAAAGATG 2694879 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || | ||||| |||||||| |||| | | | |||||||||| ||| || | ||| Sbjct 2694878 GCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCAATGTCA 2694819 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || || ||| | || ||||| || ||||| |||||||| Sbjct 2694818 CCATACAGTGCCTCTAACTCTGCAGCCATTTCCTTCTCTCCTGT 2694775 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| |||| |||||| ||||| | || |||||| ||| ||| | || Sbjct 2691803 TCTTACCCCATGGCCCAATCCTTTGGTGAAACCTGGTCCTCGCTTATGATCTGTCTTGAA 2691744 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 2691743 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2691684 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | |||||| ||||||||||| | | | ||| || |||| Sbjct 2691683 AGGGATGAACTTTCTTCTCAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 2691624 Query 9829 TGTTTTACCT 9838 | |||| ||| Sbjct 2691623 TTTTTTCCCT 2691614 Score = 87.8 bits (96), Expect = 3e-12 Identities = 182/267 (68%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || |||| | ||||| ||||| || | | |||| || || | Sbjct 2693978 CTTACCCTGCCAGCAGTTTGCCTGGTGAATGATTCCACAAAGTTAGTAAGTCCATGTTCC 2693919 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | ||| || |||||||||| || ||| | |||| |||| |||||||| Sbjct 2693918 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTACTCCTGATTATCAATTA 2693861 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| ||||| |||| |||| ||||||||| || | |||||||||| | | || | Sbjct 2693860 GAAAGGCATCAGGCAGAAGAGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATGC 2693801 Query 9122 GATTTTGGTACTGGAA--CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179 |||||||||||||||| | || || |||||||| || | |||| ||| || || Sbjct 2693800 GATTTTGGTACTGGAATTCTTGGT--TGAAAAGCAGTTCAGGGTCAAACTTCAGTTGGAA 2693743 Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTA 9206 | ||||| || | ||||| || || Sbjct 2693742 GTAATAGCCACTCAAGTGCTGCACATA 2693716 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | ||||| || || || ||||| || ||||| || || | || Sbjct 2691017 ACCTTTCACACCCATCGGAGTGGGGCAGTCATGAGGCACAGGAGGAAGGGCTCTGGTATA 2690958 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||| ||||| || |||||||||||| ||| | |||| | || || | || Sbjct 2690957 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGAACATTATAAGTTGG 2690898 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || ||||||||||||| ||||| |||| Sbjct 2690897 TGGACTGTCAATCAAATGTGATCTTGCTGA 2690868 >seq37 Length=17483923 Score = 96.9 bits (106), Expect = 5e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| || || ||||| || |||||||||||||||||| |||| | Sbjct 2520112 TCTTGACAATGTTGAAACCTGTCTCGCCGCCAAATGTGCTGGGCTTCCAGTACTCCGGAG 2520171 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| ||| |||||| |||||||| || || | ||| | | | || | Sbjct 2520172 AACAGATGGGATTCCCCAGGAGGCCCTTGAGGGAAAAAGGCGACCCAATTTGTATCATAC 2520231 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || ||| || | | | || | || | ||||| Sbjct 2520232 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCCGGATAGAACTCCA 2520291 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| || || || || | | || || || |||||||| |||||| Sbjct 2520292 TGGCATCGATATCACCATATAGTTCTTCCAACTCAGCTGCCATCTCCTTCTCTCCT 2520347 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| ||||| |||||||| || |||||||| ||| || || Sbjct 2531134 TCACCTATAAGGATGAGGCGAGTCGTCTGGAAGAGCTGCTCGTCTTCCCAGGTGGGGTGC 2531193 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | ||||| || | ||||||| ||||| || | | Sbjct 2531194 TCGGCCTTCAGCAGGTCACACACACGATTGTGCTCACGCAGCCAGACTGTGGCATAGAGC 2531253 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || || |||| Sbjct 2531254 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 2531296 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 2533905 CTCACCCCATGGCCCACGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 2533962 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| || || ||||| | |||||||||||||| | ||||| ||| ||||||| Sbjct 2533963 AGAACTGGTGGGTAAAGTGTTGTGCGAAAAAGGCAAACATGAGGTTGGCGCCTTGGGGAT 2534022 Query 9768 CGGGAGTGAAGGTCCTCCGAAGAAG 9792 | || |||| |||||| ||| || Sbjct 2534023 CAGGTATGAACTTCCTCCTAAGCAG 2534047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716675097751360