Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq139 147 5e-30 seq48 141 2e-28 seq666 111 4e-19 seq163 87.8 4e-12 >seq139 Length=8626845 Score = 147 bits (162), Expect = 5e-30 Identities = 159/209 (76%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1931265 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1931322 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||| || || ||||| ||||| |||||||| || ||||| ||||| | Sbjct 1931323 ATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAAC 1931382 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | || || ||| Sbjct 1931383 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACA 1931442 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| ||||| ||||| ||||| |||||| Sbjct 1931443 TCCAGAAAGAGTCAACCCTGCACCTTGTT 1931471 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1931037 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1931094 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||| || || ||||| ||||| |||||||| || ||||| ||||| | Sbjct 1931095 ATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAAC 1931154 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | || || || Sbjct 1931155 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAATA 1931214 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| ||||| ||||| ||||| Sbjct 1931215 TCCAGAAAGAGTCAACCCTGCACCTTGT 1931242 Score = 132 bits (146), Expect = 1e-25 Identities = 164/222 (74%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || ||||| || || || ||||| || || |||||||| |||| Sbjct 1930798 AGGTCAAGATGC---AGATCTTCGTAAAGACCCTAACAGGCAAGACCATCACCCTGGAGG 1930854 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| | ||||||||||| || || ||||| || || |||||||| || Sbjct 1930855 TGGA--GCCCAGTGATACCATCGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGCAT 1930912 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||| | |||||||| | ||||| Sbjct 1930913 TCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCGCACTCT 1930972 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | || || || |||| ||||| || || ||||| ||||| Sbjct 1930973 TTCTGACTACAATATCCAGAAAGAGTCGACCCTGCACCTTGT 1931014 >seq48 Length=15315231 Score = 141 bits (156), Expect = 2e-28 Identities = 158/209 (76%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||||||||| || || || || || || || ||||| || || | ||| || | Sbjct 866000 CAGATTTTCGTGAAGACCCTGACTGGTAAGACCATTACCCTTGAAGT--AGAGCCCAGTG 866057 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| |||||| || ||||| ||||| |||||||| ||||||| Sbjct 866058 ACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCTGACCAGC 866117 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 866118 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 866177 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| ||||| || || ||||| || ||| Sbjct 866178 TCCAGAAAGAGTCCACTCTGCACCTGGTT 866206 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || || || || ||| Sbjct 865772 CAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGA--GCCCAGTG 865829 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| |||||| || ||||||||||| |||||||| ||||||| Sbjct 865830 ACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAGC 865889 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 865890 AGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCGGACTACAACA 865949 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 865950 TCCAGAAAGAGTCCACTCTGCACCTGGT 865977 >seq666 Length=1230470 Score = 111 bits (122), Expect = 4e-19 Identities = 160/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || || || || || ||||| || || |||||||| ||| Sbjct 1199507 AGGTCAAGATGC---AGATCTTTGTAAAGACCCTAACAGGCAAGACCATCACCCTGGAGA 1199563 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| | | ||||||||| || || ||||| ||||| ||| ||| || Sbjct 1199564 TGGA--GCCCAGTGATATCATCGAGAATGTGAAGGCTAAGATCCAGGATGAAGGAGGCAT 1199621 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||| | | || ||||| ||| | || |||| |||||||| | | ||| Sbjct 1199622 TCCCCCTGACCAGAAGAGGCTCATCTTTGCCAGCAAGCAGCCAGAAGATGGCCGCATTCT 1199681 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | | || || ||| |||| ||||| | || |||||||||||| Sbjct 1199682 TTCTGACTACAACATCCAGAAAGAGTGGACCCTGCATCTTGTT 1199724 >seq163 Length=7758102 Score = 87.8 bits (96), Expect = 4e-12 Identities = 148/212 (70%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||| |||| || || || | | || |||||||| || || || || || Sbjct 3430 CAGATCTTCATGAAGACCCTGACCAGTACGACAATCACCCTTGAAGTAGA--GCCCAATA 3487 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA----TCCCTCCGGAC 178037 ||||||| |||| ||||| |||||| || ||||||||||||| | ||| || Sbjct 3488 ACACCATTAAGAATGTCAAGTCAAAGATCCAAGACAAAGAAGGAAGGCATTCCTTGTCAC 3547 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| | | ||||| || ||||||||||| ||| |||| || || | || || Sbjct 3548 CAGCAGAGGTTGATCTTTGCTGGAAAACAGCTGGAAAATGGGCACACCCTGTCTGACTAC 3607 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| |||| ||||| || || ||||| || || Sbjct 3608 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 3639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203384048059746