Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq48 114 1e-20 seq139 96.9 3e-15 >seq48 Length=15315231 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| ||||| ||||| ||||| || ||||||||| Sbjct 866214 AGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 866155 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || ||||| || |||| | ||| ||||| | || | | ||| Sbjct 866154 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCC 866095 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| ||| ||| | | | ||||| || | ||| || || | || Sbjct 866094 TTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTA 866035 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| ||||| ||||| |||||||||||||| Sbjct 866034 ATGGTCTTACCAGTCAGGGTCTTCACGAAAATCTGCAT 865997 >seq139 Length=8626845 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || ||||| || ||| ||||| || || ||||| || || ||||| Sbjct 1931023 AGACGAAGGACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGG 1930964 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | ||||||||| || || || || | ||| ||||| | ||||| || || Sbjct 1930963 CCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCT 1930904 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || || ||| || ||||| | | || || || | ||||||||||| || Sbjct 1930903 TTATCTTGGATCTTAGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTG 1930844 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || ||||||||||| |||||||| || Sbjct 1930843 ATGGTCTTGCCTGTTAGGGTCTTTACGAAGATCTGCATCTT 1930803 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || ||||| || ||| ||||| || || ||||| || || ||||| Sbjct 1931251 AGACGAAGGACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGG 1931192 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||||||||| | |||| | || Sbjct 1931191 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCT 1931132 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | || || || | ||||||||||| || Sbjct 1931131 TTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTG 1931072 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || |||||||| Sbjct 1931071 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931034 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || ||| ||||| ||||| ||||| || || || || | || || Sbjct 1931470 ACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCC 1931411 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||||||||| | |||| | || || ||| | Sbjct 1931410 AGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGG 1931351 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | || || || | ||||||||||| || || || || Sbjct 1931350 ATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1931291 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 1931290 CCAGTCAGGGTCTTCACAAAGATCTGCAT 1931262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462173924990800