Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3157 91.5 3e-13 seq2227 91.5 3e-13 seq1143 91.5 3e-13 seq1131 91.5 3e-13 seq42260 89.7 1e-12 seq4600 89.7 1e-12 seq1385 87.8 4e-12 >seq3157 Length=201260 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 42757 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 42816 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 42817 CCCCACGTTGGGC 42829 >seq2227 Length=469810 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 374896 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 374955 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 374956 CCCCACGTTGGGC 374968 >seq1143 Length=481455 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 61963 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 61904 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 61903 CCCCACGCTGGGC 61891 >seq1131 Length=934725 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| Sbjct 422965 CTCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 423024 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 423025 AGCCCCACGTTGGGC 423039 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||| |||||||| ||||| ||||||| |||||||||||||||| Sbjct 434219 GCCCGGCTAGCTCAGTAGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 434278 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 434279 CCCACGTTGGGC 434290 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||| |||||||| ||||| ||||||| |||||||||||||||| Sbjct 435693 GCCCGGCTAGCTCAGTAGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 435752 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 435753 CCCACGTTGGGC 435764 >seq42260 Length=1949 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 165695 GGACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTG 165754 || |||||| | | ||||| ||||||||||||| ||||| ||||| ||||||| | Sbjct 740 GGCCTTAAAGTGGTAGCCCGGCTAGCTCAGTCGGCAGAGCATGAGACTCTTAATCTCAGG 799 Query 165755 GTCGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||||| ||||| Sbjct 800 GTCGTGGGTTCGAGCCCCACGTTGGGC 826 >seq4600 Length=143444 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 25553 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 25494 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25493 CCCACGTTGGGC 25482 >seq1385 Length=444855 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 198549 TGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 198608 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 198609 CCCCACGTTGGGC 198621 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 217363 TGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 217304 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 217303 CCCCACGTTGGGC 217291 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||| ||||| ||||| ||||||| |||||||||||||||| Sbjct 135616 GCCCGGCTAGCTCAGTCGGCAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 135557 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 135556 CCCACGTTGGGC 135545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056933624911220