Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1287 93.3 4e-14 >seq1287 Length=728452 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| || ||||| || ||||| || | || |||||| ||||||||||| Sbjct 541987 CCTCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCT 541928 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| | || || || | |||||| | Sbjct 541927 TGAGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGG 541868 Query 17106 C 17106 | Sbjct 541867 C 541867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || || || |||||||||||||| || |||||||| |||||||| |||||| Sbjct 538450 ATGTAAGTGTCAATAAGGAGGCTGTACATTTCAGAATGTATGTTTTCCATGGCAATCTGA 538391 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || || ||||||| || || ||||| Sbjct 538390 AAGCCATAGAAACAGCGAGCTTCCGTGATCTGCACTTC 538353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517120604491920