Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2239 98.7 8e-16 >seq2239 Length=279090 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| ||||| || || | | || ||||| || || || || ||||| | ||| Sbjct 219089 ATGGCACTGCCTCCCTGCCATGCCCTTTGCCAGTTCTATGTGGCGAATGGTGAGCTGTCC 219148 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||| || || || |||||||| |||||||| ||||||||||| | Sbjct 219149 TGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGGGTACCTTTCAACATTGCCAGC 219208 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || || || || |||| ||| | || ||| | || || || || Sbjct 219209 TACGCCCTGCTCACCTGCATGATTGCACATATCACGGGCCTGAA 219252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399184138870230