Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1312 154 1e-32 seq768 134 1e-26 seq2239 107 1e-18 >seq1312 Length=1278903 Score = 154 bits (170), Expect = 1e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014 ||||||||||| || |||||||| |||||||| | ||||||||| ||||| || ||| Sbjct 710217 ATGGGAGTAACACAGGTGCAGCCCACAGTCACCAACATCTTCTCCAGCCTGAA-GAACCG 710275 Query 27015 GGG-CAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTT 27073 ||| ||| || | || | || || || || ||||| ||||| ||||| ||||| Sbjct 710276 GGGACAGCTCCCATTCACTCTTTTCAGGACCAGGATTTCTTGCTGGATGGGGACAGAGTT 710335 Query 27074 CATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTC 27133 ||||||||||| | ||||||||||||| ||||| | | |||||| ||||| || || Sbjct 710336 CATGTGGTAGTTCTCTGTCCCATCAGCATTGACACAGCTCAGGTAGCGGCACTTCGCCTC 710395 Query 27134 CCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||||||||||||| |||| || || |||||||| Sbjct 710396 CCAAATCACAGAGGGGAATCTCTCAGCGTCCTCATTGCG 710434 >seq768 Length=1314110 Score = 134 bits (148), Expect = 1e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || |||||||| ||||| |||||||| ||||||||||||||||| | |||||||||| Sbjct 180072 TTGTAAACAGAACTGCCTCCTATTATCCAAACCATGTCTACTTTATTGGTTAATTCTGGC 180131 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 ||||| |||||||||| |||||||| | ||| || || | ||||||||||| ||||| Sbjct 180132 TGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGG 180190 Score = 129 bits (142), Expect = 4e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || |||||||| ||||| |||||||| |||| |||||||||||| | |||||||||| Sbjct 181032 TTGTAAACAGAACTGCCTCCTATTATCCAAACCAAGTCTACTTTATTGGTTAATTCTGGC 181091 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 ||||| |||||||||| |||||||| | ||| || || | ||||||||||| ||||| Sbjct 181092 TGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGG 181150 Score = 120 bits (132), Expect = 2e-22 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||||||| |||| ||| |||||||| ||||||| |||||| |||||||| Sbjct 178165 AAGTTTAAATTTCTCTAAGTCAATTTCAGGAAAAAATGTGTCACTTTCAAATTCTTGCAT 178224 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||||||| |||||| || ||| | ||||| ||||| || Sbjct 178225 GATCCTTGTCACAAACAGTGTAAGATGGCCTGGCTGGCTCATGGCTTCCTT 178275 Score = 113 bits (124), Expect = 3e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 ||||| | | ||| ||||| | |||||||| | ||||||||| |||| ||||| | Sbjct 190560 TGTGGTACTTACTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTA 190619 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 |||||||||||||| |||||||| ||||| | ||||||||||| |||||||||||| || Sbjct 190620 TTCTTCTCAGGAATGGAGAACCAGGTCTTCCTCCCCATAATCACCAAATTCTGTTTACCT 190679 Score = 86.0 bits (94), Expect = 5e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 3963 TTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTG 4022 ||| | ||| | ||||| |||||||||||||||||||||||||| | |||||||||||| Sbjct 175091 TTTCTCTTAGTCTTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCTTCTTG 175150 Query 4023 CACATTAGAAAGAAC 4037 |||| |||| |||| Sbjct 175151 GACATCAGAAGGAAC 175165 >seq2239 Length=279090 Score = 107 bits (118), Expect = 1e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 ||||||||||||| || ||||||||||||||||| ||||| || || || | |||||||| Sbjct 215768 CTTTATATTCTGCACCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTT 215709 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||| | || | || || || | || ||||| || |||| |||| |||||||| | Sbjct 215708 CTTCTCGGGCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGATGCATTAGCATCCCAGA 215649 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || || || || |||||| Sbjct 215648 TCTTCACTCCCTTTGAAGACAGTTCTTTG 215620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360961965807194