Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq40669 86.0 2e-12 seq43227 80.6 8e-11 >seq40669 Length=879 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 7071 GATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGACCCT 7130 ||||||||||| || ||||||| |||| | || || ||||||||||||||| |||||||| Sbjct 471 GATCCGGCGCGCGAATTCACCAGGATTTATTCCGCTCCGCTGATGCTGCTGCCTGACCCT 412 Query 7131 GATGAGTTCGTGTCCGTACAACTGG 7155 || ||||| ||||| |||||| Sbjct 411 GACACATTCGTCTCCGTCGAACTGG 387 >seq43227 Length=240 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 7071 GATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGACCCT 7130 ||||||||||| || |||||||||||||| ||| | ||||||||||||||| | |||||| Sbjct 65 GATCCGGCGCGCGAATTCACCATGATTCATTCATCTCCGCTGATGCTGCTGCCAGACCCT 6 Query 7131 GA 7132 || Sbjct 5 GA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154963815827392