Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq58 134 2e-26 seq1287 111 2e-19 >seq58 Length=3827145 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || || || ||||||||||| | Sbjct 3738281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTATATGTTGCTCGTATACGGTTCAATG 3738222 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| |||||||||||||| ||||| ||||| || || | | |||| Sbjct 3738221 GACTCATTATTCCCCAGTATTTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 3738162 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | |||||| Sbjct 3738161 CTGTTTCTTACACCGTA 3738145 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || ||||| | Sbjct 3714404 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAGGA 3714345 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| |||| || | || |||||||| Sbjct 3714344 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTGTCCA 3714285 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 3714284 GTTCCACAGTGGTGACCCCACTATACAAGCCTTGGATCACTTTCAT 3714239 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || || || | || | Sbjct 3727609 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAACAGGTCCCGGGCACG 3727550 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || || ||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 3727549 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAATCAAGGAACTCGAAGATGTCTAAATGCCA 3727490 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 3727489 AGGCTCCAGGTAAAT 3727475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || | ||||||||| || || | ||||| | Sbjct 3732401 CATAGGTTTCATATGGACCATGCTCCTTGGCCAATTCACAACTGGCTTCCAGGGCACCAT 3732342 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| || || | |||||| | || || || | || ||||| |||| Sbjct 3732341 AATAAATGGTTTCAAAAATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGAT 3732282 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 | | | || ||||| || || || | ||||| || ||||| || ||||| | ||| Sbjct 3732281 ACCTCATCAGGATAAAAGCATCAGCCAGACCTTGCACCCCAATTCCAATAGGCCGATG 3732224 >seq1287 Length=728452 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| | || || || | Sbjct 541987 CCTCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCT 541928 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| | ||||||||| || ||||||| Sbjct 541927 TGAGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGG 541868 Query 24277 C 24277 | Sbjct 541867 C 541867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593234050665120