Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2804 257 2e-63 seq2239 165 1e-35 seq2054 147 3e-30 >seq2804 Length=597395 Score = 257 bits (284), Expect = 2e-63 Identities = 571/844 (68%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 9500 TTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAA 9559 |||| ||||||| || | | |||||| | ||| ||| || |||| || | ||| || Sbjct 234378 TTGGCCTGTTGGGTAACTTGATGGTGGTGGTGATTCTCACAAAATACGGGAGGCTCAGAA 234437 Query 9560 ACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTT 9619 | |||||||| | ||| | ||||||||||| ||||||||||| ||| | | || Sbjct 234438 TTGTGACTAACATCTACCTGCTCAACTTGGCAATTTCTGACTTGCTCTTTGTAGTCACAC 234497 Query 9620 TGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGT 9679 | || || ||||| |||||| | | ||| | || | |||| |||||| | ||| Sbjct 234498 TTCCGTTCTGGATTCACTATGTCAG-ATGGAACA--AGTGGAATTTTGGCCACGACATGT 234554 Query 9680 GTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCC 9739 |||| | ||| || | | |||||| |||||||| || |||||| |||||| | Sbjct 234555 GTAAGTTCCTCTCAGGATTTTATTACATAGGCCTGTACAGTGAGATCTTTTTCATCATTC 234614 Query 9740 TGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAA 9799 |||| ||| | |||||||| || || | ||| ||||||| ||| | || | | Sbjct 234615 TGCTGACAATTGACAGGTACCTGGCCATCGTCCATGCTGTTCTTGCCCTTCGGACCCGGA 234674 Query 9800 CAGTAACCTGTGG---CATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGT 9856 | || |||| ||| ||||| || | | | ||||||| | ||||||||| | Sbjct 234675 CCGTCACCTTTGGTATCATAGCTA---GCATCTTTACCTGGATCCTGGCAGGGCTAGCAG 234731 Query 9857 CCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG-GTAGGGTTCAGTGTGAT 9915 | ||||| |||||| |||| | || |||||| || |||| ||| || || | Sbjct 234732 CGCTCCCGGAATTTATCTTCCCTGAGTTCCAAGAGGAGAATGAGTA-CTCTCTCTGCAGT 234790 Query 9916 CCTTACTACCCAGA-GATGTCTACAAATGTTTGGAGGCGCGCCCA--CGTTGCAAAGGTG 9972 ||| |||||||| |||| | | || |||| || ||| | || || || Sbjct 234791 CCTCGTTACCCAGAGGATGAAGA-AGATACCTGGAAACGTTTCCATGCCCTGAGAA--TG 234847 Query 9973 ATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATC 10032 | || || ||||| | | || || |||||||||| ||||||||| | ||| || Sbjct 234848 AGCATCTTGAGTCTTGCTGTCCCGCTACTCATTATGGGGATCTGCTACTCAGGAATCATT 234907 Query 10033 AGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTC 10092 |||| ||| |||| |||| || | | ||||||||||||||| | ||||| |||||| Sbjct 234908 AGAACGCTGCTGAGATGCCCTAGTAGACAAAAGTACAAGGCCATCCGACTCATTTTTGTC 234967 Query 10093 ATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACC 10152 |||||||||| || ||| |||| |||||||||||||| | ||||| || || ||| | Sbjct 234968 ATCATGGTGGTCTTTTTCATTTTCTGGACACCCTACAATCTAGTTCTTCTTCTTTCTGCT 235027 Query 10153 TTTCACGCAACCCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTC 10210 ||||| | ||| | | || | || ||| ||| || | | ||||| ||| Sbjct 235028 TTTCAAATGATCCTCCCTGAAAACAGCTGTGAGCA--GAATAAACAGCTGGACCAGGCCA 235085 Query 10211 TGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGT 10270 || | | ||| || | |||||||| ||||| ||||||||||| | ||||| || | Sbjct 235086 TGAAGGTGACAGAAGTGATCGCCTACACCCACTGCTGCATCAACCCCATCATCTATGCCT 235145 Query 10271 TCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCT 10330 | | || |||| || | | |||| ||||||||||||||| |||| || || | Sbjct 235146 TTGCTGGTGAGAGATTCCGGAAGTACCTCCACCACTTCTTCCACATCTACCTGAGCAAAT 235205 Query 10331 ACCT 10334 |||| Sbjct 235206 ACCT 235209 Score = 257 bits (284), Expect = 2e-63 Identities = 571/844 (68%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 176386 TTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAA 176445 |||| ||||||| || | | |||||| | ||| ||| || |||| || | ||| || Sbjct 234378 TTGGCCTGTTGGGTAACTTGATGGTGGTGGTGATTCTCACAAAATACGGGAGGCTCAGAA 234437 Query 176446 ACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTT 176505 | |||||||| | ||| | ||||||||||| ||||||||||| ||| | | || Sbjct 234438 TTGTGACTAACATCTACCTGCTCAACTTGGCAATTTCTGACTTGCTCTTTGTAGTCACAC 234497 Query 176506 TGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGT 176565 | || || ||||| |||||| | | ||| | || | |||| |||||| | ||| Sbjct 234498 TTCCGTTCTGGATTCACTATGTCAG-ATGGAACA--AGTGGAATTTTGGCCACGACATGT 234554 Query 176566 GTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCC 176625 |||| | ||| || | | |||||| |||||||| || |||||| |||||| | Sbjct 234555 GTAAGTTCCTCTCAGGATTTTATTACATAGGCCTGTACAGTGAGATCTTTTTCATCATTC 234614 Query 176626 TGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAA 176685 |||| ||| | |||||||| || || | ||| ||||||| ||| | || | | Sbjct 234615 TGCTGACAATTGACAGGTACCTGGCCATCGTCCATGCTGTTCTTGCCCTTCGGACCCGGA 234674 Query 176686 CAGTAACCTGTGG---CATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGT 176742 | || |||| ||| ||||| || | | | ||||||| | ||||||||| | Sbjct 234675 CCGTCACCTTTGGTATCATAGCTA---GCATCTTTACCTGGATCCTGGCAGGGCTAGCAG 234731 Query 176743 CCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG-GTAGGGTTCAGTGTGAT 176801 | ||||| |||||| |||| | || |||||| || |||| ||| || || | Sbjct 234732 CGCTCCCGGAATTTATCTTCCCTGAGTTCCAAGAGGAGAATGAGTA-CTCTCTCTGCAGT 234790 Query 176802 CCTTACTACCCAGA-GATGTCTACAAATGTTTGGAGGCGCGCCCA--CGTTGCAAAGGTG 176858 ||| |||||||| |||| | | || |||| || ||| | || || || Sbjct 234791 CCTCGTTACCCAGAGGATGAAGA-AGATACCTGGAAACGTTTCCATGCCCTGAGAA--TG 234847 Query 176859 ATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATC 176918 | || || ||||| | | || || |||||||||| ||||||||| | ||| || Sbjct 234848 AGCATCTTGAGTCTTGCTGTCCCGCTACTCATTATGGGGATCTGCTACTCAGGAATCATT 234907 Query 176919 AGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTC 176978 |||| ||| |||| |||| || | | ||||||||||||||| | ||||| |||||| Sbjct 234908 AGAACGCTGCTGAGATGCCCTAGTAGACAAAAGTACAAGGCCATCCGACTCATTTTTGTC 234967 Query 176979 ATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACC 177038 |||||||||| || ||| |||| |||||||||||||| | ||||| || || ||| | Sbjct 234968 ATCATGGTGGTCTTTTTCATTTTCTGGACACCCTACAATCTAGTTCTTCTTCTTTCTGCT 235027 Query 177039 TTTCACGCAACCCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTC 177096 ||||| | ||| | | || | || ||| ||| || | | ||||| ||| Sbjct 235028 TTTCAAATGATCCTCCCTGAAAACAGCTGTGAGCA--GAATAAACAGCTGGACCAGGCCA 235085 Query 177097 TGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGT 177156 || | | ||| || | |||||||| ||||| ||||||||||| | ||||| || | Sbjct 235086 TGAAGGTGACAGAAGTGATCGCCTACACCCACTGCTGCATCAACCCCATCATCTATGCCT 235145 Query 177157 TCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCT 177216 | | || |||| || | | |||| ||||||||||||||| |||| || || | Sbjct 235146 TTGCTGGTGAGAGATTCCGGAAGTACCTCCACCACTTCTTCCACATCTACCTGAGCAAAT 235205 Query 177217 ACCT 177220 |||| Sbjct 235206 ACCT 235209 Score = 113 bits (124), Expect = 5e-20 Identities = 201/293 (69%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432 || |||||| || | || || ||||||| ||| | ||||| | || |||| |||| Sbjct 160771 CTGGTGTTTGTCATCGGCCTGGTGGGCAACATCCTGGTGGTCCTGATCCTCATGCAATAC 160712 Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492 | || | |||||| | | || | | | || | ||| |||| || ||||| |||| Sbjct 160711 AAGAGGCTCAAAAGCATGACCAGTGTCTACCTCCTCAACCTGGCCATTTCTGATCTGCTC 160652 Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552 || || || || |||| || ||||| |||||| | || || | ||| |||| Sbjct 160651 TTCCTCTTCACGCTGCCCTTCTGGATAGACTATAA---ACTGAGAGATAACTGGGCTTTC 160595 Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 || | | || |||| ||| | ||| || | | |||||| |||||||| || || Sbjct 160594 GGCAATGCCATGTGCAAATTCCTCTCAGGCTTTTATTACATTGGCTTGTACAGCGAGATC 160535 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGT 176665 |||| |||||||||||| ||| | |||||||| || || ||||| ||||||| Sbjct 160534 TTTTTCATCATCCTGCTGACATTTGACAGGTACCTGGCCATTGTCCATGCTGT 160482 Score = 113 bits (124), Expect = 5e-20 Identities = 201/293 (69%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546 || |||||| || | || || ||||||| ||| | ||||| | || |||| |||| Sbjct 160771 CTGGTGTTTGTCATCGGCCTGGTGGGCAACATCCTGGTGGTCCTGATCCTCATGCAATAC 160712 Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606 | || | |||||| | | || | | | || | ||| |||| || ||||| |||| Sbjct 160711 AAGAGGCTCAAAAGCATGACCAGTGTCTACCTCCTCAACCTGGCCATTTCTGATCTGCTC 160652 Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666 || || || || |||| || ||||| |||||| | || || | ||| |||| Sbjct 160651 TTCCTCTTCACGCTGCCCTTCTGGATAGACTATAA---ACTGAGAGATAACTGGGCTTTC 160595 Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 || | | || |||| ||| | ||| || | | |||||| |||||||| || || Sbjct 160594 GGCAATGCCATGTGCAAATTCCTCTCAGGCTTTTATTACATTGGCTTGTACAGCGAGATC 160535 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGT 9779 |||| |||||||||||| ||| | |||||||| || || ||||| ||||||| Sbjct 160534 TTTTTCATCATCCTGCTGACATTTGACAGGTACCTGGCCATTGTCCATGCTGT 160482 >seq2239 Length=279090 Score = 165 bits (182), Expect = 1e-35 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| || || | |||| |||| ||||||| ||||||||| |||||||| || Sbjct 219249 AGGCCCGTGATATGTGCAATCATGCAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGT 219190 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 |||||||| |||||||| || || | |||||||||||||||||| ||||| || |||| Sbjct 219189 ACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCGCC 219130 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| |||||||| ||||| ||||| Sbjct 219129 ACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCAT 219089 >seq2054 Length=1030836 Score = 147 bits (162), Expect = 3e-30 Identities = 127/157 (81%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||| | ||||||||| || || |||||||||||||| ||||| | ||| Sbjct 304744 CAGCGCCGCAGCTTGCTCCTGAGGGTCTTCAGATTTTCCCCCAGGGAATTCACGTGCTCC 304803 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || | ||| | || |||||||| ||||| ||||||||| ||||||||||||||| | Sbjct 304804 TTGAC---GTCAGGGCCCTGGTTCTCAGCCTGTGGCATCACCACCTCCAGGTAAAACTTG 304860 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| || |||||||||| Sbjct 304861 ATCATCTCCGACAAGGCTTGGCAACCGAGGTAACCCT 304897 Score = 93.3 bits (102), Expect = 5e-14 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 137925 GTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCT 137984 |||| || || |||| || |||| ||||||||||| || |||||||||||||| || Sbjct 302488 GTTTATCTTCATTGTTGTA---TAGGTTTCTATGTAGTTGATAAAGATGTCAAACTCACT 302544 Query 137985 CATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||||||||||||| ||||| || ||||||| Sbjct 302545 CATGGCCTTGTAGACACCTTTCTCTTGGAGCT 302576 Score = 86.0 bits (94), Expect = 7e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| |||||||||||||| || |||||| ||||||||||||||||||| Sbjct 306048 AAAGAAAGTCTTCACCCTGCTGAAGGCCCTCCGGAGCTCTCGGAGCATGTGGGGCAGGCT 306107 Query 138357 GGTGGGCAATGTAGG-GCAGTCGTCCCCAGACTCACTGTCATATTTGTTGTCGGCCCACA 138415 | | || || ||||| |||| || |||||| |||| | | | |||| || Sbjct 306108 GTTTGGGAA-GTAGGTGCAGCTGTTTTCAGACTGGGTGTCCTGGCTCCAGCTGGCCTCCA 306166 Query 138416 CCCCGGCCAGGAGAACCAGGCAACACAGCAG 138446 |||| ||||| | || || || || ||||| Sbjct 306167 CCCCAGCCAGAAAGACTAGCCAGCATAGCAG 306197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589592243683760