Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1726 244 1e-59 seq469 120 4e-22 >seq1726 Length=2510625 Score = 244 bits (270), Expect = 1e-59 Identities = 257/338 (76%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| |||| ||||||| ||| | | | | ||| || ||||| |||||||||||||| Sbjct 2486549 AGCAGAACCTCAATGTCGGCCTCTATGTCGATGGTAGGGAAGCGGCGGCTGTACCTGCGC 2486490 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || || || | || |||| |||||| |||||||||||||| | |||||||||| Sbjct 2486489 ACAGGGACCCCATCCGGGCCAACCAGGAACTTTTCGAAGTTCCAGGCGATGTCGTTGCGG 2486430 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || |||||| ||| ||||| | || ||||| Sbjct 2486429 CACACCGGAGACCAGGTGATGAACTTAGGGTCGGTCATGAGCGCAGTGGCATCATCGCTG 2486370 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||||||||||||||| || || ||||| || ||||| || ||| || ||||| ||| Sbjct 2486369 GGCGCCGGCAGGGCCTCCCGCAGAAAGGCAAAAAGCGGGTGCGCCTGGGCGCCGTTCACC 2486310 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| | | | ||||| || ||||| ||| || || ||||||| ||| Sbjct 2486309 TCGCACTTCTCGAACAACGTGAAGTTGGGTTCGAACCCGCCACCTGGTCGGACGTACTTG 2486250 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||||| || |||||| | || | ||| || ||||| Sbjct 2486249 AGGGAGTTCAGGATCTCCTCGTTTTTGGCATTCTCCTG 2486212 Score = 176 bits (194), Expect = 5e-39 Identities = 178/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| ||||| || ||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 2485931 CCTGATGACCAAATTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGGCCGAGGC 2485872 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||| ||||| ||||||||||| ||||| |||||||||||| | |||||||| || || | Sbjct 2485871 GCCTTTGCAGATCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGCGAAGCCA 2485812 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||| | ||| |||||| | | |||| ||||||| || || || |||| Sbjct 2485811 CATTCTCAATGAGGAGCACCTTGCCCCGCAGGGAGCCCAAGCTCAAGGGATCCCCACCGG 2485752 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAG 83622 | ||||| || |||||||||| ||| || | | ||||||| || || Sbjct 2485751 CCAGAGGGCGCGCAGAGAAGGCGTGCACGGAGCGCGGGACTGCCGCCGCGAG 2485700 >seq469 Length=2371171 Score = 120 bits (132), Expect = 4e-22 Identities = 190/267 (71%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || || | | ||| || || ||| ||||||||| || ||| Sbjct 1337345 GCAGCTGCGCAGCATCTATGAGAGCA-GCCTCTCCATCGGCAACTTCGCCTCCCGCCTGC 1337403 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 1337404 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 1337463 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || |||||| ||| | | |||| |||||| Sbjct 1337464 GCGGCTCTCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAT 1337522 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| ||||| |||| ||| ||||| ||||| |||| | ||||| ||| Sbjct 1337523 GTGCAGCTGCTGTACCCTCGGGCCAAGAACGACCGCGTCTGGACCCTCGAGTTCGTGGGC 1337582 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGC 50674 |||||||||||||||||||||||| Sbjct 1337583 AAGCTGGACGAGCGCTGCCGGCGCCGC 1337609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608296871287760