Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq40669 291 2e-74 seq41696 188 2e-43 seq43227 89.7 2e-13 seq41688 80.6 8e-11 >seq40669 Length=879 Score = 291 bits (322), Expect = 2e-74 Identities = 256/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 6954 GATCCGGCGCGTGAATTCACCATGATTCAGTCAGCCCCGCTGATGCTGCTGGCAGACCCG 7013 ||||||||||| |||||||||| |||| | || || ||||||||||||||| | ||||| Sbjct 471 GATCCGGCGCGCGAATTCACCAGGATTTATTCCGCTCCGCTGATGCTGCTGCCTGACCCT 412 Query 7014 GACGAGTTCGTGTCCGTCAAGCTGGCATAACTTCCACCTGTGGCCCATTCGGGCCACCTT 7073 ||| ||||| |||||| | |||| |||||||| || ||||||| |||||||||||| Sbjct 411 GACACATTCGTCTCCGTCGAACTGGTTTAACTTCCCCCCGTGGCCCTGTCGGGCCACCTT 352 Query 7074 TCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATTGCTCGGCTGAATGAACTTGGT 7133 ||||||||||| |||||||| | |||||||||||||| ||||| |||| ||| | || Sbjct 351 TCTGGAGTATTTCCCATGACCTAAAAAGAAAAGCTGATCGCTCGCCTGAGTGACATGGGC 292 Query 7134 ACCCAGCTTAACCGCGAAGTCAGCACCAGCGGCACCATTCAGGAACTCACTATGCGTATT 7193 | | ||||||||||| ||| ||||||||| ||||||| ||||| || ||||||||| Sbjct 291 GCTTAACTTAACCGCGAGGTCGGCACCAGCGTGACCATTCCAGAACTTACCATGCGTATT 232 Query 7194 GCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCACCTCGGTTGACGGCGAAAGCGGCGGG 7253 ||||| || || ||||||| ||| || || |||| || ||||||| |||| || | Sbjct 231 GCTGACCTGGACGAGGAGCCGGAGGGTGATGCCAATTCCATTGACGGTGAAAACGTATAG 172 Query 7254 CAGAATGCTGCCGACAGCA 7272 |||||||| ||||||||| Sbjct 171 AAGAATGCTCCCGACAGCA 153 >seq41696 Length=2962 Score = 188 bits (208), Expect = 2e-43 Identities = 153/183 (84%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 7065 GGCCACCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATTGCTCGGCTGAAT 7124 |||| | |||||||||||| |||||||| || |||||||||||||||||||| |||||| Sbjct 190 GGCCCCGGTTCTGGAGTATTTCCCATGACTGAAAAAGAAAAGCTGATTGCTCGCCTGAAT 131 Query 7125 GAACTTGGTACCCAGCTTAACCGCGAAGTCAGCACCAGCGGCACCATTCAGGAACTCACT 7184 || ||||| || ||| |||||||||| ||| || |||||||||| ||||| ||||| || Sbjct 130 GACCTTGGCACTCAGATTAACCGCGAGGTCCGCGCCAGCGGCACGATTCATGAACTTACG 71 Query 7185 ATGCGTATTGC-TGAGCTTGAAGAGGAGCTGGATGGAGACGCC-ACCTCGGTTGACGGCG 7242 ||||||||||| ||| || ||| ||||||||||||| | ||| | ||| ||||||| | Sbjct 70 ATGCGTATTGCTTGAACTGGAAAAGGAGCTGGATGGTTAAGCCAATTTCGATTGACGGTG 11 Query 7243 AAA 7245 ||| Sbjct 10 AAA 8 >seq43227 Length=240 Score = 89.7 bits (98), Expect = 2e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 6954 GATCCGGCGCGTGAATTCACCATGATTCAGTCAGCCCCGCTGATGCTGCTGGCAGACCCG 7013 ||||||||||| ||||||||||||||||| ||| | ||||||||||||||| ||||||| Sbjct 65 GATCCGGCGCGCGAATTCACCATGATTCATTCATCTCCGCTGATGCTGCTGCCAGACCCT 6 Query 7014 GACG 7017 |||| Sbjct 5 GACG 2 >seq41688 Length=3966 Score = 80.6 bits (88), Expect = 8e-11 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 7020 TTCGTGTCCGTCAAGCTGGCATAACTTCCACCTGTGGCCCATTCGGGCCACCTTTCTGGA 7079 ||| | |||| | | ||||||||| |||| || | ||||| || ||||||||||||||| Sbjct 92 TTCTTCTCCGACTAACTGGCATAAATTCCCCCAGGGGCCCTGTCTGGCCACCTTTCTGGA 33 Query 7080 GTATTACCCATGACAGAGAAAGAAAAGCTGAT 7111 |||| | ||| |||||||| |||| ||||| Sbjct 32 TTATTTCTCATCTCAGAGAAAAAAAATCTGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148162725610636