Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3163 141 1e-28 seq2502 125 7e-24 seq2217 125 7e-24 seq3414 114 1e-20 seq1368 114 1e-20 seq1059 105 7e-18 seq350 95.1 1e-14 >seq3163 Length=297541 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || |||||||| || || || || |||||||| | || || ||| || Sbjct 215127 AAAATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGGTGGAACCC 215068 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | | || | || |||| || ||||| |||||||| | ||| Sbjct 215067 AGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCCCTCCTGAC 215008 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| |||||||| || | ||||| || |||||| Sbjct 215007 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTAC 214948 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | || |||||||| || | || ||||||||||| Sbjct 214947 AACATCCAGAAGGAGTCAACTCTGCATCTTGTTCTTCGTCTGAGGGGCGGC 214897 >seq2502 Length=682766 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || |||||| | || || || ||| Sbjct 414030 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACAATCACCCTTGAAGTAGAGCCCAGT 414089 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| || | ||||| Sbjct 414090 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 414148 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | || || ||||||||||| || | |||||||| |||||||| Sbjct 414149 GCAGAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 414208 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| ||||| || || ||||||||||||| || Sbjct 414209 CATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 414256 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || |||||||| | ||||| |||||||||||| | || || || ||| Sbjct 412569 AATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAG 412628 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||| || | ||||| || |||||||| | ||||| Sbjct 412629 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 412688 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | || ||| | |||||||| Sbjct 412689 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTACAA 412748 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| || |||| ||||| Sbjct 412749 CATCCAGAAAGAATCCACTCTGCA 412772 >seq2217 Length=590369 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||| ||| || || || || || ||||| ||||| |||||||| |||| ||||| ||| Sbjct 77286 AAACGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGCCCA 77227 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||| |||| | ||||| | ||||| ||||||||||| | |||| Sbjct 77226 GTGACATCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 77167 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || || | || |||||||||||| || | |||| ||| ||||||| Sbjct 77166 AGCAGCGTCTGATTTTTGCCAGCAAACAGCTGGGGGATGGCTGCACTCTCTCAGACTACA 77107 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||| ||| | | ||||| || ||| |||| Sbjct 77106 ACATCCAGAAAGAGTTCCCCCTGCACCTGGTGCTGCG 77070 >seq3414 Length=315879 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || |||||||| | || ||| | ||| Sbjct 11170 ATGCAGATCTTTGTGAAGACCCTCACAGGTAAGACCATCACTCTTGAGGTCAAGCCCAGT 11229 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | ||||| | ||||| ||||||||||| | ||| || Sbjct 11230 GACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACAAG 11289 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || ||||| ||||||| || | |||| ||| ||||||||| Sbjct 11290 CAGCGTCTGATTTTTGCCAGCAAATAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 11349 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| ||| | || ||| |||| || | || ||| Sbjct 11350 ATCCAGAAAGAGTCCACTCTGTACCTGGTGCTGCGTCTGCGTGGTGGC 11397 >seq1368 Length=2199528 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||| ||||| || |||||||| | || || || |||||||| | || || ||| || Sbjct 788680 AAAACACAAATTTTTGTAAAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACCC 788739 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | | || | || |||| || ||||| |||||||| | ||| Sbjct 788740 AGTGATACCATTGAGAATGTGAAAGGCAAGATTCAGGATAAAGAAGGCATCCCTCCTGAC 788799 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| |||||||| || | ||||| || |||||| Sbjct 788800 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTAC 788859 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| ||| | || |||||||| || | | |||||| |||| Sbjct 788860 AACATCCAGAAAGAGTCAACTCTGCATCTTGTTCTTTGTCTGAGGGCCGGC 788910 >seq1059 Length=696884 Score = 105 bits (116), Expect = 7e-18 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||| | || || || || || ||||| ||||| ||||||| |||| ||||| ||| Sbjct 62233 ATGTAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCATTCTCGAGGTCGAGCCCAGT 62174 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | ||| | |||| | ||||| | ||||| ||||||| |||||| Sbjct 62173 GACCCATCGAAAATG-TCAAAGCCAAAATCCAAGACAAGGAGGGCAC-------GACCAG 62122 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || |||||||||||||| || | ||||| ||| ||||||||| Sbjct 62121 CAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 62062 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGC 40903 |||||||| ||| |||| |||| || ||| ||| Sbjct 62061 ATCCAGAAAGAGTCCACCCTGCCCCTGGTGCTGC 62028 >seq350 Length=1614380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAA-CGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||||| |||||||||| | || || || | ||| |||| || || || || | Sbjct 327814 AAAATGCAAATTTTCGTAAAAACCCCTAACAGGAAGGACCGTCACTGTGGAGGTGAAACC 327755 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || || | | | | | | || | || |||| || ||||| |||| ||| | || Sbjct 327754 CAGTGATACCATCGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCACCCCTCCTGA 327695 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || ||||| |||||||| || | | ||| || ||||| Sbjct 327694 CCAGCACAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCACACTCT----GACTA 327639 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || || | || | |||||| || | || ||||||| ||| Sbjct 327638 CAACATCCGGAGAGACTCGACTCGGCATCTTGTTCTTCGTCTGAGGGGTGGC 327587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514796114873440