Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3163 122 1e-22 seq1368 116 6e-21 >seq3163 Length=297541 Score = 122 bits (134), Expect = 1e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| || |||||||| || || || ||| | ||| | ||| | | Sbjct 215125 AATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGGTGGAACCCAG 215066 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || ||||| ||||||||||| || || ||||| || Sbjct 215065 TGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCCCTCCTGACCA 215006 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || |||||||| || || | |||||| | || || | || || || Sbjct 215005 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTACAA 214946 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 || || || || |||||| ||||| | ||| | ||| Sbjct 214945 CATCCAGAAGGAGTCAACTCTGCATCTTGTTCTTCGT 214909 >seq1368 Length=2199528 Score = 116 bits (128), Expect = 6e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 124542 CAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGAT 124601 ||||| ||| |||| || ||||||| || || || ||| | ||| | ||| | | |||| Sbjct 788686 CAAATTTTTGTAAAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACCCAGTGAT 788745 Query 124602 ACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAA 124661 || ||| ||| | ||| || ||||| ||||||||||| || || ||||| || || Sbjct 788746 ACCATTGAGAATGTGAAAGGCAAGATTCAGGATAAAGAAGGCATCCCTCCTGACCAGCAG 788805 Query 124662 AGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATT 124721 ||||| || |||||||| || || | |||||| |||| || | || || || || Sbjct 788806 AGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTACAACATC 788865 Query 124722 CAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| |||||| ||||| | ||| Sbjct 788866 CAGAAAGAGTCAACTCTGCATCTTGTT 788892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754835638419200