Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2217 113 4e-20 seq2502 111 1e-19 seq3414 105 6e-18 seq1059 104 2e-17 seq3163 89.7 4e-13 seq1368 84.2 2e-11 >seq2217 Length=590369 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 118515 CCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATA 118574 ||||| | | || ||||| ||| | | ||||||| || |||||||| || | | Sbjct 77061 CCGCGCAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGA 77120 Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 |||| |||| | |||||||| | || | || ||||||||||| || || || ||| Sbjct 77121 GTGCAGCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATG 77180 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 |||||||||||| ||||| ||| || | ||||| | |||| || |||||||||| Sbjct 77181 CCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCG 77240 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 | || | || ||||| || || || || ||||| |||||| Sbjct 77241 AGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGC 77282 >seq2502 Length=682766 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || ||||| || |||||||| || || || || ||| || Sbjct 412778 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCTTCC 412719 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| | | |||||| || || || ||||| ||||||||| Sbjct 412718 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 412659 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | |||| |||||| || ||| ||||| | ||| | ||||| Sbjct 412658 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTA 412599 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||||||||| |||||||| Sbjct 412598 CCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 >seq3414 Length=315879 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || |||||||| || |||||||| || | ||||| ||| Sbjct 11382 CAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATC 11323 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||| ||| | || | || |||||||||| || || || |||||||||||||| Sbjct 11322 CTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGGATGCCCTCCTTGTC 11263 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| ||| || | ||||| |||||| || || |||||| | || | || Sbjct 11262 TTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGT 11203 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| |||||||| Sbjct 11202 CTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq1059 Length=696884 Score = 104 bits (114), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| | | | || |||||||| || |||||||| || | |||||| ||| Sbjct 62029 CAGCACCAGGGGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 62088 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || | || ||||||||||| ||| ||||||||||||| Sbjct 62089 CTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCG-------TGCCCTCCTTGTC 62141 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| ||| || | ||||| || ||| || ||||||||||| | | || Sbjct 62142 TTGGATTTTGGCTTTGACATTTTCGATGG-GTCACTGGGCTCGACCTCGAGAATGATGGT 62200 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||| ||| Sbjct 62201 CTTGCCTGTGAGGGTCTTCACAAAGATCTACAT 62233 >seq3163 Length=297541 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | |||||| |||||| ||||| || || Sbjct 214928 GTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCT 214987 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| | |||||| || ||||| ||||| || || || ||| || ||| Sbjct 214988 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTGGCTTTC 215047 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || || || ||||| | || | || || || || || ||| Sbjct 215048 ACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTAGGGTT 215107 Query 118722 TTTACAAAAATCTGCAT 118738 ||||||||||| ||||| Sbjct 215108 TTTACAAAAATTTGCAT 215124 >seq1368 Length=2199528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || | |||||| |||||| ||||| || || Sbjct 788879 GTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCCAGCTGCTTGCCT 788820 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| | |||||| || ||||| ||||| || || || ||| || ||| Sbjct 788819 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTGCCTTTC 788760 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || || || ||||| | || | || || || || | ||| Sbjct 788759 ACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTACGGTT 788700 Query 118722 TTTACAAAAATCTG 118735 ||||||||||| || Sbjct 788699 TTTACAAAAATTTG 788686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433483055588248