Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq3107 111 3e-19 >seq3107 Length=408548 Score = 111 bits (122), Expect = 3e-19 Identities = 114/144 (79%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| ||||| ||||||||||||||||||||| | || ||||| Sbjct 374644 GCATTTTTTGGAGCGCAGCTGAATTCCTTTATCCATGTTATTATGTACTCCTACTATGGG 374585 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| ||||| |||||||| ||||||||||| || | || | Sbjct 374584 TTAACGGCATTTGG-CCCATGGATTCAG-AAGTATCTCTGGTGGAAACGGTACTTGACCA 374527 Query 52175 TAATGCAGTTGGTACAGTTCCATA 52198 | ||||| |||| |||| |||| Sbjct 374526 TGTTGCAGCTGGT-GAGTTACATA 374504 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| ||||| | ||||||||||| || || ||||| || || ||| Sbjct 376513 TGGTGGTACTTTGTATCTAAAGGAGTTGAATACTTGGACACAGTTTTTTTTATCCTAAGG 376454 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || ||| || |||||||||||||| | ||| |||||||| | Sbjct 376453 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 376394 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| | ||||| || || Sbjct 376393 TGGTGGATTGGAATTAAGTGGGTGGCTGGGGGGCA 376359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922438693867760