Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2217 102 5e-17 seq3414 100 2e-16 seq1059 96.9 2e-15 seq3163 93.3 3e-14 seq336 93.3 3e-14 seq2502 86.0 4e-12 >seq2217 Length=590369 Score = 102 bits (112), Expect = 5e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGC 34225 |||||||| | |||||||||||| | | |||||||| ||||||||||| || || Sbjct 77061 CCGCGCAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGA 77120 Query 34226 TGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACG 34285 | | | || ||| ||| |||| || ||||| || ||||||||||| || | | Sbjct 77121 GTGCAGCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATG 77180 Query 34286 CTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTC 34344 | ||||||||| || ||| ||||| | || | || || | | ||||| || Sbjct 77181 CCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTC 77239 Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGC 34387 | |||||||| ||||| ||||| || ||||||||||||||| Sbjct 77240 GAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGC 77282 >seq3414 Length=315879 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | ||| |||||||| ||||||||||| || Sbjct 11396 CCACCACGCAGACGCAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 11337 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || |||| || |||| || ||||| || ||||||| ||| || Sbjct 11336 AGAGTGCAGCCATCCTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGG 11277 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || ||| ||||| | || | || | || | | | ||| Sbjct 11276 ATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTTGAC 11218 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| || || ||||| || |||||||||||||||||| || Sbjct 11217 CTCAAGAGTGATGGTCTTACCTGTGAGGGTCTTCACAAAGATCTGCATCTCT 11166 >seq1059 Length=696884 Score = 96.9 bits (106), Expect = 2e-15 Identities = 157/222 (71%), Gaps = 18/222 (8%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||| | | || |||||||| ||||||||||| || || ||| | || Sbjct 62029 CAGCACCAGGGGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 62088 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || ||||| || |||||||||||| || ||||||||| Sbjct 62089 CTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCG-------TGCCCTCCTTGTC 62141 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTC----GATTCGACGTCCACCGTG 34351 || ||| ||||| | || | ||| || |||| | ||||| || | || Sbjct 62142 TTGGAT-TTTGGCTTTGACAT----TTTCG-ATGGGTCACTGGGCTCGACCTCGAGAATG 62195 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 ||||| ||||| ||||| || ||||||||||||| |||| || Sbjct 62196 ATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTACATCTCT 62237 >seq3163 Length=297541 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | || || || || | ||| || ||||| ||||||||||| || Sbjct 214898 CCGCCCCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAA 214957 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| ||||||||| || Sbjct 214958 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 215017 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || || || ||| || ||||| | || | || | ||| | | ||| || Sbjct 215018 ATGCCTTCTTTATCCTGAATC-TTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCAC 215076 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || || ||||| ||||| || ||||| Sbjct 215077 CTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCAT 215124 >seq336 Length=3219352 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/231 (71%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTT-CTTTCTGTATGTTGTAGTCGGACAG 34224 ||||| || | ||||||||||||| | || ||||||| ||| ||||||| || || Sbjct 1022879 CCGCGAAGACACAGCACCAGGTGT---GGGCTGGACTTTCTGGATGCTGTAGTCCGAGAG 1022823 Query 34225 -CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCA 34283 ||| || | || |||| ||| ||| || ||||| || ||| ||||||| | | Sbjct 1022822 ACTGT-GGCCATCCTCCAGCTGTCTGCTGGCAAAAATCAGACGCCGCTGGTCAGGTGAGA 1022764 Query 34284 CGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACG 34342 || ||||||||| || ||| ||||| | || || || ||||| | | |||| Sbjct 1022763 TGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTTGCAATGGAATCACTGGGCTCGAAC 1022705 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 |||| |||||||| || || ||||| || | |||||||||||||||| || Sbjct 1022704 TCCAGAGTGATGGTCTT-CCTGTGAGGGTCT-CACAAAGATCTGCATCTCT 1022656 >seq2502 Length=682766 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||||||||| ||||||||||| |||| || | || Sbjct 412781 AGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCT 412722 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || || | || ||||||||| || | || |||||||| Sbjct 412721 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 412662 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | || || || | ||||||||| Sbjct 412661 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 412602 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | ||||| |||||||||||||| Sbjct 412601 TTACCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| ||||||||| ||||||||||| ||||| || | || Sbjct 414242 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 414183 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || || ||||| | || ||||||||| || | || |||||||| Sbjct 414182 TTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 414123 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | || || || | ||||| || Sbjct 414122 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGT 414063 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || ||||| |||||||||||| Sbjct 414062 CTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 414029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322813333816640