Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq51 102 8e-17 seq1287 89.7 5e-13 >seq51 Length=3716683 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 || ||||||| ||| | | || ||||||||| | | | | |||||||| | Sbjct 849287 TTCAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 849228 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| ||||| |||||||||||||| |||||||| |||||||||| Sbjct 849227 GCTGATACTCTGAAACTCGTTTTTCGAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTT 849168 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 849167 CCATAAAATCAAAGGGATTTTCTG 849144 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | ||||||||| || ||||| || ||||| |||||||| ||| ||| Sbjct 846291 ATCCAAGTTCCACAAGTAATCTATCTGCTACAAACTCAATATATTGTTTCATCAAAACAC 846232 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | ||| || | |||||||||||||| Sbjct 846231 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 846189 >seq1287 Length=728452 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || ||||| || || || ||||| | ||||||||| || Sbjct 541985 TCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCTTG 541926 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| | ||||| || || ||||| || Sbjct 541925 AGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGGCT 541866 Query 16379 ACCAATCGCTCACC 16392 || | |||||||| Sbjct 541865 ACGACACGCTCACC 541852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462132196708400