Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq633 1362 0.0 seq4640 120 2e-22 >seq633 Length=2035718 Score = 1362 bits (1510), Expect = 0.0 Identities = 1298/1650 (79%), Gaps = 41/1650 (2%) Strand=Plus/Minus Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACAT-CTATCTTTA-- 107192 ||| || ||||||| || || |||| | |||||||| ||||| || || | ||| Sbjct 6837 AGGATCCGAGGCAGGCTTTTACCGAGGGTGTTTGTCTAGAGAAGTAATACTTTTTTTTTT 6778 Query 107193 --CCATCACTCTGGAGTTGAACTTGATGTT-CTG-GA------------TTAGTTTGTAA 107236 |||||| | |||| ||||| ||||||| ||| || || | |||||| Sbjct 6777 GGCCATCAGTTTGGAATTGAAATTGATGTGGCTGTGACTGTGTTGCCATTTGGATTGTAA 6718 Query 107237 TTAAAGGCATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAAC 107293 || || ||||||||||||||||||| | |||| | || || |||||||| || Sbjct 6717 TTGAAAACATTTTGTTCTGTCCAAGGCTTCTGTCCTTCCCCTCCGGCCCTGTGCCTGGAC 6658 Query 107294 TCTCC-TGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGAC 107352 ||||| || ||| | || ||||||||||| | ||||| ||||||| | ||| | | Sbjct 6657 TCTCCCTGGTCTTC-ATTCCATGAAGATGTTTTGGTGGCTGAAGAAGTTCCGCCAGCAGC 6599 Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412 | | ||||||||||| |||||||||||||| |||||| | || |||||| |||| | | Sbjct 6598 GTTACCTGTGGGCCCTTGGCTGCTATATGCTTCTGGCCATCATTGCTCTGAAACTTACTC 6539 Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472 |||| | |||||||| | || || |||||||||||| ||||| || || || Sbjct 6538 TCAGACTGAAATGTGACTTTGAGCATCTGTATCTGGAGTCCATCGACTTTCACAGCAGGC 6479 Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532 ||||||||||||| |||||||| ||||||||| ||||||||||| ||| ||||||||| Sbjct 6478 ACTGTAGGGACATCTTGTACAAGTCCCTGAAGCTACCAGCAAAGAGGTCCCTCAACTGTT 6419 Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592 | ||| |||| ||||||||| |||||||||| | ||||| |||||| ||||||||| Sbjct 6418 CCGGGGTCACCCGAGGGGACAGGGAAGCAGTGCTTCAGGCTCTCCTAAGCAACCTGGAGA 6359 Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652 ||||| || || ||||||| | | ||| | ||| ||||| | ||||| |||| Sbjct 6358 CCAAGAACCAGAGGGAGCCTCTCTCAGACACTGACTACATCAACCTGACCAGGAACTGCC 6299 Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712 || |||||||||| ||||||||| || |||||||||||| || |||||| |||||| Sbjct 6298 AGGACTTCAAGGCCAGGAGGAAGTTCCTAGGGTTCCCACTGAGCAAGGAAGAGTTAGACT 6239 Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772 ||||||| ||||| || ||||||||||| |||||||||||||| ||||| ||||||||| Sbjct 6238 TCCCCATAGCCTATTCCATGGTGGTCCACGAGAAGATTGAAAATTTTGAGAGGCTGCTGC 6179 Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832 |||| ||||||| ||| ||||| ||||| |||||||| ||||||| |||||||||||| | Sbjct 6178 GAGCGGTGTATGTCCCACAGAATATATATTGTGTCCATGTGGATGAGAAGTCCCCAGAAA 6119 Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892 ||||||||||||| |||||||| ||| ||||||||||| |||||||| ||||||| | Sbjct 6118 CTTTCAAAGAGGCAGTCAAGGCAATTGCCTCCTGCTTCCCAAATGTCTTTCTGGCCAGCA 6059 Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952 || |||||| |||||| ||||| ||||||||||| ||||| || ||||||||||| |||| Sbjct 6058 AGCTGGTCCGGGTGGTGTATGCATCCTGGTCCAGGGTGCAGGCCGACCTGAACTGCATGG 5999 Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012 ||||||||||||||||| | ||||| ||||| ||||| |||||||| || |||||||||| Sbjct 5998 AAGACTTGCTCCAGAGCCCCGTGCCTTGGAAATACTTCCTGAATACCTGTGGGACAGACT 5939 Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | || |||||||| ||||| |||||||||| ||| ||||||||| |||| || || || | Sbjct 5938 TTCCTATAAAGACAAATGCTGAGATGGTCCAGGCTCTCAAGATGCTGAATGGGAAAAATA 5879 Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG 108132 |||||||||| ||| | ||| ||||| |||| | || |||||||| || | || |||| Sbjct 5878 GTATGGAGTCCGAGATCCCTAATGAGTACAAACAGAACCGCTGGAAGTATCACTTTGAGT 5819 Query 108133 TGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCA 108192 ||||||||||| || | || | ||| ||||||||||||||||| |||||||| | Sbjct 5818 TGACAGACACATTGAAGATGACAGACCAGAAGAAGGACCCTCCCCCTGGTAATTTACATA 5759 Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252 | ||||| || ||||| ||||||||||| ||||||| ||| |||| ||||||||||| | Sbjct 5758 TATTCACGGGAAATGCATATTTTGTGGCTTCTCGAGACTTCATCCAGCATGTCTTAGAGA 5699 Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312 |||| ||||||||| |||| | |||||||| ||||||||||| || || |||||||||| Sbjct 5698 ACCCCAAATCCCAACAACTGATCGAATGGGTAAAAGACACCTACAGTCCTGACGAACACC 5639 Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372 |||||||||| ||||||||||| || |||||||||||||| || || ||||||||||| Sbjct 5638 TCTGGGCCACACTTCAGCGTGCACCCTGGATGCCTGGCTCCGTGCCCTACCACCCCAAGT 5579 Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432 || ||||||||||| || ||||||| || |||||||||||||||||| ||||||||||| Sbjct 5578 ATGACATCTCAGACTTGGCTGCCATTGCTAGGCTCGTCAAGTGGCAGGGCCACGAGGGAG 5519 Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492 ||||||| ||||| ||||||||||| ||| ||| | ||| | | ||| || || | Sbjct 5518 ATGTCAGTGCCGGGGCCCCTTATGCACCTTGCAGTGGGACCCACCAGCGGGGAATTTGTA 5459 Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552 |||| || || ||||||||| ||||||| || |||||||||||||| | || ||||||| Sbjct 5458 TTTATGGAGCTGGGGACCTGCACTGGATGCTTCAGAACCATCACCTGCTAGCCAACAAGT 5399 Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612 ||||||| | |||||||| || || ||||||||||||||||| |||| |||||| Sbjct 5398 TTGACCCAAAAGTGGATGACGGCGCTCTCCAGTGCTTAGAAGAGTATTTACGCTATAAGG 5339 Query 108613 CCATCTATGGGACTGAACTTTGAGCTGCACTGTG-------GGCCA---GGGA---CTGT 108659 ||||||||||||||||||| |||| ||||||| ||||| | || ||| Sbjct 5338 CCATCTATGGGACTGAACTCTGAG--ACACTGTGCAAGACTGGCCACCTGAGAGTCTTGT 5281 Query 108660 GCCAACATGCCCAGGGCGTACT-GGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATC 108718 || ||| ||| | ||| | || ||| |||| || | ||| | | |||||| |||| || Sbjct 5280 GCAAACCTGCTGAAGGCCTGCTGGGTCATGTGAGGCG-GGGAGGCCAGGGCTCTGGAGTC 5222 Query 108719 CATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||||||| ||||| || || | ||| Sbjct 5221 TGTGGCATCCCCAAGGGTAAGGGGACCGCT 5192 >seq4640 Length=97181 Score = 120 bits (132), Expect = 2e-22 Identities = 566/884 (64%), Gaps = 25/884 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||| ||| ||| || || ||||| || || || || || ||| | || Sbjct 48494 CCGCTTAGCAAAGAGGAGGCAGAGTTTCCGATTGCATATTCTATAGTAGTTCATCACAAA 48435 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | || |||||||| | || || | Sbjct 48434 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATA 48375 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| |||||| || | || || || || | | |||| ||||| Sbjct 48374 CATGTGGACAGAAAGTCCGAGGAATCCTTTTTAGGCGCAGTGATAGGCATTGCATCCTGT 48315 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| ||||||| || ||| ||||| ||||| || ||| | | Sbjct 48314 TTCAGTAATGTCTTTGTGGCCAGCCAGCTGGAGAATGTGGTCTATGCTTCATGGAGCCGG 48255 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC-TCAGTGCCA--TGGAAG 107984 || || || ||||| ||||| ||| | || |||| | || | ||||| | ||||| Sbjct 48254 GTCCAGGCAGACCTCAACTGCATGAAGGA---GCTCTATAGAATGAGTGCAAACTGGAAA 48198 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||||| | || || || | || || || || || || || || || ||| | Sbjct 48197 TACTTGATAAACCTCTGTGGTATGGATTTTCCTATTAAAACAAACCTGGAAATTGTCAGG 48138 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaa 108104 |||||| || | |||| | ||||| | || ||||| | | || ||| | Sbjct 48137 AAGCTCAAGTCATTAATGGGTGAAAACAGCCTTGAAACTGAGAAAATGCC--AGCCCACA 48080 Query 108105 aa--aaaTCGCTGGAAATACCGCTATGAGGTGACAGAC---ACACTGT--ACCCTACCAG 108157 || | | | ||||| | | |||| | | || | |||| | | | | Sbjct 48079 AAGCAGAAAGGTGGAAGAAGCATCATGAAATCATTGATGGGAAACTGAGAAACACAGGGG 48020 Query 108158 CAAGATGAAGGAC--CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 || || ||| | ||||| | || | |||| |||| |||| | |||||||||| Sbjct 48019 CA-GACAAAGCAAGGCCTCCTCTGGAAA---TACCTGTGTTTTCAGGCAGTGCCTATTTT 47964 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT 108275 |||| | | | | || ||| | || |||| || ||| ||||| | | Sbjct 47963 GTGGTCAGTAGGGACTATGTAGGTTACGTGCTAGAAAATGAAAAAATCCAAAAGTTTATA 47904 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| |||||||| || |||||||| ||| | |||||||||||| |||| | | | Sbjct 47903 GACTGGGCGAAAGACACTTACAGCCCCGATGAATATCTCTGGGCCACCATTCAAAG-GAT 47845 Query 108336 CCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCTCAGACATGACTG 108393 || | | | ||||| | | || || | || |||||| |||| || |||||| | Sbjct 47844 CCCCGAAGTCCCTGGTGCACTCCCC-GCAAGCCATAAGTATGACATGTCTGACATGCAGG 47786 Query 108394 CCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTT 108453 | | |||||| | ||||| ||| | ||| |||| || ||||| || || || || | Sbjct 47785 CAGTTGCCAGGTTTGTCAAATGGTACTACTACGAAGGCGATGTTTCCAAAGGCGCCCCAT 47726 Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513 | |||||||| ||| ||||| | | | | ||||||| |||| |||||| | Sbjct 47725 ACCCACCCTGCAGTGGCATCCACGTGCGTTCTGTGTGCATTTTTGGGGTGGGGGACTTAA 47666 Query 108514 ACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||||| || | || || || | || || |||||||||||| Sbjct 47665 ACTGGATGCTGCGCAAGCACCATTTGTTTGCCAACAAGTTTGAC 47622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347989960108956